Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D14
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.92 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   6.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   6.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   8.6  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 84  PPIHADEGGEAGPYTKVQG-LLSYPEICAKLINPNQNGKRPHLRKV 218
           PP+HAD+  E   Y K+Q  L+   ++C + I   Q   R H +++
Sbjct: 249 PPLHADQAEE---YKKIQQILIRMNKLCIQTIG-GQIKPRKHEQRL 290


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 0.92
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 293  NPEATFTIIIRKAEGIGPKTFARIVDLTKMRTLSV 189
            +P  T TII  +    GP T  R+ DL +  TL V
Sbjct: 962  DPSDTVTIITAEEAPSGPPTSIRVDDLDQ-HTLKV 995


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 54  LDSDSEISGVPPIHADEGGEAGPYTKVQGL 143
           +  D  + G+ P+H   G   GP    +G+
Sbjct: 53  IPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 129 WYKDQLHHPHRRVSVELRKFHCLNRASTYVQWC 31
           WYKD    P      EL + + +NR    +  C
Sbjct: 367 WYKDGRQLPGTGRQSELLRLNGINREDRGMYQC 399


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 129 WYKDQLHHPHRRVSVELRKFHCLNRASTYVQWC 31
           WYKD    P      EL + + +NR    +  C
Sbjct: 367 WYKDGRQLPGTGRQSELLRLNGINREDRGMYQC 399


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 289 QKPPSPLSSGRRK 251
           Q PPS   SGRR+
Sbjct: 398 QTPPSRKESGRRR 410


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 57  DSDSEISGVPPIHADEG 107
           DSD + S  P +H+  G
Sbjct: 121 DSDPDPSSEPTVHSQSG 137


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 153 PEICAKLINPNQNGKRPHLR 212
           P++  + + P+Q G  P+LR
Sbjct: 255 PKMTPQSLLPSQTGLSPYLR 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,333
Number of Sequences: 438
Number of extensions: 2064
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)