Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D13
         (278 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0245 - 1849156-1849197,1849300-1849341,1849564-1849605,184...    28   0.93 
12_02_0226 + 15887835-15891188                                         25   8.6  

>06_01_0245 -
           1849156-1849197,1849300-1849341,1849564-1849605,
           1849697-1849824,1850078-1850285,1850381-1850561,
           1851761-1852114,1852577-1852803
          Length = 407

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 102 ANELFQHPRPILQPGDPLV*TPPPGGAQLCSLSE 1
           ++EL+ H RP   P DP+   PPP  +Q CS  E
Sbjct: 52  SDELYHHYRPRTTPSDPV---PPPLSSQ-CSYPE 81


>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 121 SLVFDVFRNVTKNEQNQTIV*HRLCISFLC 210
           S  +D FRN+ +N Q  T+  + + I  LC
Sbjct: 537 SEAWDAFRNINENGQKPTLKAYTVFIQELC 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,601,352
Number of Sequences: 37544
Number of extensions: 107248
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)