Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D13
         (278 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    27   2.6  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    27   2.6  
Z75547-6|CAA99903.1|  377|Caenorhabditis elegans Hypothetical pr...    26   3.5  
Z68116-10|CAI79231.1|  182|Caenorhabditis elegans Hypothetical p...    26   3.5  
AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical ...    26   3.5  
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    26   3.5  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    26   4.6  
Z67735-2|CAA91530.2|  403|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 172 FDFVHFWLHYETHQ 131
           FDF +FW HY  H+
Sbjct: 141 FDFTYFWFHYINHK 154


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 172 FDFVHFWLHYETHQKLVISNKYKRKRI 92
           FD    W+ Y T +K++  NKY RKR+
Sbjct: 458 FDGTTLWVIYTT-KKMMEQNKYYRKRV 483


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
            protein LIN-59 protein.
          Length = 1312

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 169  DFVHFWLHYETHQKLVISNKYKRK 98
            D  HFWLH +  Q +V SN+  +K
Sbjct: 985  DTCHFWLHVDCCQYVVRSNEKAQK 1008


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
            lineage protein 59 protein.
          Length = 1312

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 169  DFVHFWLHYETHQKLVISNKYKRK 98
            D  HFWLH +  Q +V SN+  +K
Sbjct: 985  DTCHFWLHVDCCQYVVRSNEKAQK 1008


>Z75547-6|CAA99903.1|  377|Caenorhabditis elegans Hypothetical
           protein R11D1.5 protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 261 FNLFCRSYRYLVTFVSVTQKAY 196
           F+LFC+S +   TF+S+   AY
Sbjct: 6   FSLFCKSLQETCTFISLILNAY 27


>Z68116-10|CAI79231.1|  182|Caenorhabditis elegans Hypothetical
           protein F42F12.11 protein.
          Length = 182

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = -1

Query: 215 VLHRKLIHNRCYTIV*FCSFLVTLRNTSKTSDFK*I*TQTNYFSTLVRFCSRGIH*FRRR 36
           V  R LI  RC+ +    + +++     ++ ++  + T+ N  + L+RF +      +R 
Sbjct: 102 VAQRNLISERCFLLQGKIAHVLSYPGGYRSPEYPLLQTELNLLNELLRFGNHNFQ-LQRV 160

Query: 35  HPVELSFV 12
           H +E  FV
Sbjct: 161 HLIEEMFV 168


>AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8b protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 108 INANELFQHPRPILQPGDPL 49
           IN+N  F  PRP+LQ   P+
Sbjct: 255 INSNPFFDFPRPVLQKTVPI 274


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 108 INANELFQHPRPILQPGDPL 49
           IN+N  F  PRP+LQ   P+
Sbjct: 255 INSNPFFDFPRPVLQKTVPI 274


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 273 SFTHFNLFCRSYRYLVTFVSVTQKAYT*PMLYDSLI--LFIFGY 148
           S  HF  +CRS +++  FV +  K     ML   LI   F+ G+
Sbjct: 580 STLHFLFYCRSLKFVGPFVLMVYKIIVRDMLRFLLIYSFFLMGF 623


>Z67735-2|CAA91530.2|  403|Caenorhabditis elegans Hypothetical
           protein C15A7.1 protein.
          Length = 403

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 169 DFVHFWLHYETHQKLVISNKYKRKR 95
           +FV FWL+     ++ ++N Y+R++
Sbjct: 107 EFVDFWLYQIWKPRIYMTNTYERRQ 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,920,188
Number of Sequences: 27780
Number of extensions: 104564
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)