Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D13
         (278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   0.70 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   0.70 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   2.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 0.70
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 221 NVTKYR*LLQNRLKWVKLH 277
           N  +YR  LQ R KW+ +H
Sbjct: 339 NHPRYRQELQKRCKWMGIH 357


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 0.70
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 221 NVTKYR*LLQNRLKWVKLH 277
           N  +YR  LQ R KW+ +H
Sbjct: 339 NHPRYRQELQKRCKWMGIH 357


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 KYR*LLQNRLKWVKL 274
           KYR  LQ RL W++L
Sbjct: 334 KYRLELQKRLPWLEL 348


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 21  ELHRVAASKLVDPP 62
           ELHR + SK   PP
Sbjct: 553 ELHRASLSKTPQPP 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,455
Number of Sequences: 438
Number of extensions: 1198
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)