Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D12
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 0.59
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 0.78
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 26 1.0
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 3.1
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.2
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 24 5.5
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 24 5.5
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 24 5.5
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 24 5.5
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 23 7.3
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 7.3
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 23 9.6
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 23 9.6
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.1 bits (57), Expect = 0.59
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -3
Query: 273 WLCYMWHSWRTSPVLRRRGSGRAVHTGSRRSWISRHL 163
W+ Y+WH + G G+ V T + S+++ L
Sbjct: 385 WMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSL 421
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.6 bits (56), Expect = 0.78
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = +3
Query: 81 PNFFITSNQYLNSN*KVCADIKIKF*PTGADLSNFDESQYELLCLNRDAGGRDSFSNYAT 260
PN N+ N V D F T +D SN DESQ+ L N +S +
Sbjct: 619 PNLIYYDNEPTEENRLVFEDTNNTFIDTDSDDSNADESQF-LEYANDSPNSSESLESLNN 677
Query: 261 CNIAMSP 281
+ + SP
Sbjct: 678 QSYSSSP 684
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 1.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 73 KLHQIFLSRPISTSIAIKKFVLT---SKLNFNLQVPTYPTSTRASM 201
+LH+ LS ++ S AIKKF + K N + PT+ T T+ S+
Sbjct: 52 QLHESDLSCVVTDSEAIKKFWTSGFFGKGNLSRSEPTWHTRTKRSL 97
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 24.6 bits (51), Expect = 3.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = -3
Query: 273 WLCYMWHSWRTSPVLRRRGSGRAVHT 196
W+ Y+WH + G G+ V T
Sbjct: 400 WMAYLWHRNENGILADEMGLGKTVQT 425
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 252 SWRTSPVLRRRGSGRAVHTGSRRSWI 175
SWR ++ + +G + HTG+++ +I
Sbjct: 214 SWRIEEQIKAQINGCSTHTGTKKPYI 239
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 234 VLRRRGSGRAVHTGSRRSW 178
+L RR +GR VH GS RS+
Sbjct: 123 LLVRRITGRLVHPGSGRSY 141
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 91 LSRPISTSIAIKKFVLTSKLNFNLQVP 171
L++P+ST +++ F L +LN P
Sbjct: 386 LAQPVSTVVSVASFELDPRLNITQPKP 412
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 244 NESRPPASRFRQSSSYWLSSKL 179
N+ RP ASR R S+Y SS +
Sbjct: 296 NQRRPSASRVRSFSNYVKSSNV 317
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 165 GADLSNFDESQYELLCLNRDAGGRDSFSNYATCNIAMSPSRT 290
G +++ F + + + R R SN ++ N+A +PS T
Sbjct: 223 GLEMNGFSKKRDNVNIPKRTYSARSIPSNISSTNVATTPSNT 264
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 236 PSSGVAVQAEQFILALVE 183
PSSG+ + QFIL +E
Sbjct: 28 PSSGILITFSQFILITIE 45
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 58 DQRSQKLHQIFLSRPISTSIAIKKFVLTSKLN 153
D S L+ +FLS + T IKK+ + + N
Sbjct: 307 DATSILLYGVFLSNTVVTQALIKKYGIEDEAN 338
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +3
Query: 45 VVRPRSTITKIAPNFFITSNQYLNSN*KVCADIK 146
++R ++ T + FF +Q +NS +VC +++
Sbjct: 56 LLRVKNETTTVDVGFFGVCDQAINSTSRVCHELR 89
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3
Query: 270 LCYMWHSWRTSPVLRRR 220
L +W W+ P+LR R
Sbjct: 624 LSQLWDGWKKEPLLRAR 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,261,198
Number of Sequences: 5004
Number of extensions: 22797
Number of successful extensions: 66
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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