Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D11
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    25   1.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    24   2.4  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    24   3.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    23   5.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.4  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    23   7.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    22   9.7  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    22   9.7  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    22   9.7  

>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 170 GRGPVGSPQGATR*LRK 120
           GR PVG PQ A R L K
Sbjct: 189 GRAPVGRPQDAERQLEK 205


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 173 HGRGPVGSPQGATR*LRKPWCPHPKC 96
           H R   G+ +  T  LR   CP+P C
Sbjct: 194 HLRASYGTTKYCTSYLRNQQCPNPSC 219


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 109 PIPNAADGPGGF*WVFPGASRPGESHT 29
           P P A  GPG     FPGA  PG + T
Sbjct: 77  PPPGAEGGPGAGFGGFPGAG-PGGART 102


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 173 HGRGPVGSPQGATR*LRKPWCPHPKC 96
           HGR P   P   T+   KPW     C
Sbjct: 316 HGRFPRPVPHNGTKPDHKPWKHEEHC 341


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 94   PHLGWGHHGFRSHRVAPCGEPTGPRPCNG 180
            P   W +HG RS ++A   +   P   NG
Sbjct: 2618 PRQFWAYHGSRSKKIADIVKRHIPPTING 2646


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 116 TAFAVTASPPAANPPGLV 169
           +A A  A+PPAA+ PGL+
Sbjct: 335 SAGAGGANPPAASQPGLL 352


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 126 AKAVVPPSQMRRTDP 82
           +K+ VPP +M+R DP
Sbjct: 73  SKSFVPPIKMQRRDP 87


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 37  TRPGVKRPEIPTKNPRVRPP 96
           T P   +PE P+K+  +RPP
Sbjct: 397 TSPTQGQPESPSKSILLRPP 416


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   ARGEGTSPY-QCGTRPGVKRPEIPTKNPRVRPPHL 102
           ++   +SP  Q GTR G K    P       PP L
Sbjct: 253 SKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSL 287


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 122 KPWCPHPK 99
           KPW PHP+
Sbjct: 442 KPWMPHPE 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,006,857
Number of Sequences: 5004
Number of extensions: 18538
Number of successful extensions: 42
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)