Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D11
(196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 0.46
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 29 0.60
U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical pr... 27 1.8
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 2.4
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 27 2.4
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 27 2.4
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 27 2.4
Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical pr... 26 4.3
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 26 4.3
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 26 4.3
AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular... 26 4.3
AF038608-12|AAY86214.1| 132|Caenorhabditis elegans Hypothetical... 26 4.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 25 5.6
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 25 5.6
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 25 7.4
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 25 7.4
AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical ... 25 7.4
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 25 9.8
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 25 9.8
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 25 9.8
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 0.46
Identities = 22/63 (34%), Positives = 24/63 (38%)
Frame = -3
Query: 194 PIPIGPLHGRGPVGSPQGATR*LRKPWCPHPKCGGRTRGFLVGISGRFTPGRVPHWYGDV 15
P P GP GP G+P G P PHP R R + P R PH D
Sbjct: 71 PGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTRLP-----RPSRSPH--SDA 123
Query: 14 PSP 6
P P
Sbjct: 124 PEP 126
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +1
Query: 31 CGTRPGVKRP--EIPTKNPRVRPPHLGWGHHGF 123
CGT G P ++ NP +PP GWG F
Sbjct: 655 CGTTAGSVAPVAQVRQTNPSRQPPRGGWGRDDF 687
>U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical
protein C30B5.1 protein.
Length = 706
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 141 GDAVTAKAVV-PPSQMRRTDPGVFS 70
GDA T + PP ++R+T PG FS
Sbjct: 182 GDATTRTMIYHPPHKVRKTSPGEFS 206
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 107 HPKCGGRTRGFLVGISGRFTPG 42
HP CGG G+ +G+FT G
Sbjct: 2506 HPGCGGDCLGYGYNSNGKFTTG 2527
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic
avoidance abnormal protein9 protein.
Length = 937
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 37 TRPGVKRPEIPTKNPRVRPPH 99
T P ++ P IPTK PPH
Sbjct: 882 TIPSIELPNIPTKQTSSTPPH 902
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 179 PLHGRGPVGSPQGATR*LRKPWCPHPKCGGRTRGFLVGISG 57
P + PVG+P R R PHP+C R + + G
Sbjct: 372 PRGSQSPVGTPLAGHRTKRAGCLPHPQCTLHVRRYKRNLIG 412
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory
channel protein.
Length = 937
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 37 TRPGVKRPEIPTKNPRVRPPH 99
T P ++ P IPTK PPH
Sbjct: 882 TIPSIELPNIPTKQTSSTPPH 902
>Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical
protein C17G1.6b protein.
Length = 685
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +1
Query: 25 YQCGTRPGVKRPEIPTKNPRVRPPHLGWGHHGFRSHRVAP---CGEPTGPRPCNG 180
Y TRP R PT V P W G S P CG T R C G
Sbjct: 472 YATTTRPYWTRTTRPTPTTTVAPDTASWSAWGEWSACSQPCGGCGTKTRVRACYG 526
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = -3
Query: 167 RGPVGSPQGATR*LRKPWCPHPKCGGRTRGF--LVGISGRFTPGRVPHWYGDVPSP 6
RG SP AT + W P+ G + G F P VP YG VP P
Sbjct: 2266 RGEAPSPTPATPFIPPGWVAPPQMYPMQPGQQRFLPPPGHFGPMGVPSPYGSVPPP 2321
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = -3
Query: 167 RGPVGSPQGATR*LRKPWCPHPKCGGRTRGF--LVGISGRFTPGRVPHWYGDVPSP 6
RG SP AT + W P+ G + G F P VP YG VP P
Sbjct: 2684 RGEAPSPTPATPFIPPGWVAPPQMYPMQPGQQRFLPPPGHFGPMGVPSPYGSVPPP 2739
>AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular
matrix metalloproteaseprotein.
Length = 685
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +1
Query: 25 YQCGTRPGVKRPEIPTKNPRVRPPHLGWGHHGFRSHRVAP---CGEPTGPRPCNG 180
Y TRP R PT V P W G S P CG T R C G
Sbjct: 472 YATTTRPYWTRTTRPTPTTTVAPDTASWSAWGEWSACSQPCGGCGTKTRVRACYG 526
>AF038608-12|AAY86214.1| 132|Caenorhabditis elegans Hypothetical
protein C09G12.17 protein.
Length = 132
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 104 DGGTTAFAVTASPPAANPPGLVRAMAQ 184
+G T +++T +PP NP V M Q
Sbjct: 64 NGCPTVYSITCNPPDTNPTATVSMMFQ 90
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 40 RPGVKRPEIPTKNPRVRPPHLGWGHHGFRSHRVAPCGEPTGPRPCNGP 183
R RP PT P+ PP H ++H+ P+ PR + P
Sbjct: 708 RSEYSRPFRPTSRPKTPPPPPPMQHQNHQNHQYQQ-QHPSLPRSASTP 754
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 40 RPGVKRPEIPTKNPRVRPPHLGWGHHGFRSHRVAPCGEPTGPRPCNGP 183
R RP PT P+ PP H ++H+ P+ PR + P
Sbjct: 708 RSEYSRPFRPTSRPKTPPPPPPMQHQNHQNHQYQQ-QHPSLPRSASTP 754
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 43 PGVKRPEIPTKNPRVRPPHLGWGHHGFRSHRVAPCGEPTGPRP 171
P RP++PT PRV P FR + +P PRP
Sbjct: 168 PSFVRPQVPTAPPRVIAPQ--QPQQPFRPIQPIQPQQPFQPRP 208
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = +1
Query: 106 WGHHGFRSHRVA-PCG 150
W HG+R+H+ + PCG
Sbjct: 509 WSRHGYRTHKNSQPCG 524
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 95 RIWDGGTTAFAVTASPPAANPPGLVRAMAQW 187
RIW TT T +PP PP W
Sbjct: 318 RIWTTTTTQAPPTEAPPTEAPPTTQTTPTSW 348
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 6 RRRDVSVPVWDSPGREAPGNTH*KPPGP 89
RRRD P SPGR +P + + PGP
Sbjct: 115 RRRDRRTPPRRSPGRRSPPRS--RLPGP 140
>AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical
protein C30F8.3 protein.
Length = 328
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 168 TRPGGFAAGGDAVTAKAVVPPSQMRRTDPGVFS 70
+RPGG A A A VPP P VF+
Sbjct: 39 SRPGGCVAAAPAALYSAPVPPPPAYPFAPQVFT 71
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 194 PIPIGPLHGRGPVGSP 147
P P GP+ G+GP G P
Sbjct: 269 PGPEGPMGGQGPPGEP 284
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 194 PIPIGPLHGRGPVGSP 147
P P GP+ G+GP G P
Sbjct: 306 PGPEGPMGGQGPPGEP 321
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 194 PIPIGPLHGRGPVGSP 147
P P GP+ G+GP G P
Sbjct: 290 PGPEGPMGGQGPPGEP 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,146,780
Number of Sequences: 27780
Number of extensions: 142799
Number of successful extensions: 375
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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