Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D10
(186 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 62 9e-12
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 54 2e-09
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 52 1e-08
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 50 5e-08
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 48 2e-07
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 44 4e-06
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 43 5e-06
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 43 6e-06
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 42 1e-05
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 41 2e-05
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 40 3e-05
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 40 4e-05
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 40 6e-05
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 38 2e-04
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 36 0.001
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 34 0.003
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 31 0.015
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 0.75
SPAC664.08c |||traub transciption factor family protein |Schizos... 24 2.3
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 24 3.0
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 22 9.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 22 9.3
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 62.1 bits (144), Expect = 9e-12
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +1
Query: 28 LGQVKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
LGQ KIIMATNRPDTL+PALLR GRLDRKIE P
Sbjct: 269 LGQTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 54.4 bits (125), Expect = 2e-09
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDPT 129
VK+IMATNR DTL+PALLR GRLDRKIE P+
Sbjct: 274 VKVIMATNRADTLDPALLRPGRLDRKIEFPS 304
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 51.6 bits (118), Expect = 1e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +1
Query: 34 QVKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
+VK+I ATNR DTL+PALLR+GRLDRK+E P
Sbjct: 324 RVKVIAATNRVDTLDPALLRSGRLDRKLEFP 354
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 49.6 bits (113), Expect = 5e-08
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
+K+IMATNR D L+PALLR GR+DRKIE P
Sbjct: 286 IKVIMATNRIDILDPALLRPGRIDRKIEFP 315
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 47.6 bits (108), Expect = 2e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +1
Query: 31 GQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
G +K++ ATNRP+TL+ AL+R GR+DRK+E
Sbjct: 317 GNIKVLFATNRPNTLDEALMRPGRIDRKVE 346
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 43.6 bits (98), Expect = 4e-06
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
M+ GQV II ATNRPD ++PAL R GR DR+ P
Sbjct: 399 MDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFP 437
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 43.2 bits (97), Expect = 5e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ A L V I+ AT RPD ++PALLR GRLD+ I
Sbjct: 734 MDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLI 769
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 42.7 bits (96), Expect = 6e-06
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKI 117
+K+IMATNR L+PAL+R GR+DRKI
Sbjct: 332 IKVIMATNRISDLDPALIRPGRIDRKI 358
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 41.5 bits (93), Expect = 1e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDR 111
++ L V ++ ATNRPD ++PAL+R GRLDR
Sbjct: 674 LDGIEALRNVLVLAATNRPDMIDPALMRPGRLDR 707
Score = 38.7 bits (86), Expect = 1e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +1
Query: 31 GQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
G+V +I ATNRP++++ AL R GRL+++IE
Sbjct: 414 GKVVVIAATNRPNSIDEALRRPGRLEKEIE 443
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 41.1 bits (92), Expect = 2e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 31 GQVKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
GQV +I ATNRP+ L+PAL R GR DR+ P
Sbjct: 512 GQVVVIGATNRPNDLDPALRRPGRFDREFYFP 543
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 40.3 bits (90), Expect = 3e-05
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
M+ V +I ATNRPD ++PAL+R GRLD+ I P
Sbjct: 627 MDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVP 665
Score = 39.9 bits (89), Expect = 4e-05
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIE----DPTSQ 135
M+ + V ++ ATNRP++++PAL R GR DR+++ DPT +
Sbjct: 352 MDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGR 397
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 39.9 bits (89), Expect = 4e-05
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKI 117
V +I ATNRPD ++PA+LR GRLD+ +
Sbjct: 629 VYVIAATNRPDIIDPAMLRPGRLDKTL 655
Score = 37.5 bits (83), Expect = 2e-04
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKI 117
V +I ATNRPD+L+ AL R GR DR+I
Sbjct: 315 VLVIGATNRPDSLDSALRRAGRFDREI 341
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 39.5 bits (88), Expect = 6e-05
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKI 117
+ + TNRPD L+PALLR GR DR+I
Sbjct: 436 IVVFAGTNRPDVLDPALLRPGRFDRQI 462
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 37.5 bits (83), Expect = 2e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKI 117
V +I ATNRPD L+P+LLR GR D+ +
Sbjct: 795 VFVIGATNRPDLLDPSLLRPGRFDKLV 821
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 35.5 bits (78), Expect = 0.001
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
V I ATN P++L+PAL R GR DR I P
Sbjct: 407 VVFIGATNFPESLDPALTRPGRFDRHIHVP 436
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 33.9 bits (74), Expect = 0.003
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 43 IIMATNRPDTLEPALLRTGRLDRK 114
I M TN P+ L+PAL+R GR+D K
Sbjct: 342 IFMTTNHPEKLDPALVRPGRVDVK 365
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 31.5 bits (68), Expect = 0.015
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
M+ L + +I TNR D ++ ALLR GRL+ +E
Sbjct: 409 MDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHME 445
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 0.75
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 153 PTLACLLASGIFDLPVQPSGSEQSRL-EGVRSVGRHYYLD 37
P + L +G+F +P+QP+ + S +G + ++ YLD
Sbjct: 106 PPIPPLHKTGVFSVPLQPTHTVNSNSDDGYENSSKNEYLD 145
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 99 SGSEQSRLEGVRSVGRHYYLDLTQASCRIHAAP 1
S E S E ++GR +Y+D++++ R AP
Sbjct: 31 SDREDSSEEENDTLGREHYVDVSESKLRSKQAP 63
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 3.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 150 TLACLLASGIFDLPVQPSGSEQSRL 76
+L C+LA LP+ P SE ++L
Sbjct: 316 SLGCILAELFLGLPLFPGNSEYNQL 340
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 138 LLASGIFDLPVQPSGSEQSRLEGVRSV 58
LL +FD+ + PS S+ S +E +V
Sbjct: 77 LLLEKLFDMGILPSKSKMSDIENKANV 103
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 122 IPLANKQARVGNSEDPRYSH 181
+ L NKQ R + P YSH
Sbjct: 633 LQLDNKQIRAIEASQPTYSH 652
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 794,252
Number of Sequences: 5004
Number of extensions: 12640
Number of successful extensions: 49
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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