Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D10
(186 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 60 2e-10
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 60 2e-10
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 56 4e-09
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 54 1e-08
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 52 4e-08
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 50 2e-07
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 50 2e-07
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 49 5e-07
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 47 2e-06
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 47 2e-06
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 43 3e-05
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 43 3e-05
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 43 3e-05
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 43 3e-05
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 43 3e-05
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 43 3e-05
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 43 3e-05
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 42 8e-05
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 42 8e-05
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 42 8e-05
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 39 4e-04
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 38 0.001
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 38 0.001
AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical ... 37 0.002
AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical ... 37 0.002
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 36 0.003
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 34 0.015
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 34 0.015
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 33 0.027
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 33 0.027
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 33 0.027
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 33 0.027
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 33 0.035
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 33 0.035
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 33 0.035
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 31 0.082
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 31 0.082
U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid tran... 26 3.1
Z95619-2|CAB09114.1| 450|Caenorhabditis elegans Hypothetical pr... 26 4.1
AC006708-19|AAF60423.3| 588|Caenorhabditis elegans Mtm (myotubu... 26 4.1
AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical... 25 7.1
Z93391-8|CAB07684.2| 397|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical pr... 25 9.4
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 60.1 bits (139), Expect = 2e-10
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +1
Query: 28 LGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
LG+VK+IMATNRPDTL+PALLR GRLDRKIE
Sbjct: 279 LGKVKVIMATNRPDTLDPALLRPGRLDRKIE 309
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 60.1 bits (139), Expect = 2e-10
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +1
Query: 28 LGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
LG+VK+IMATNRPDTL+PALLR GRLDRKIE
Sbjct: 287 LGKVKVIMATNRPDTLDPALLRPGRLDRKIE 317
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 55.6 bits (128), Expect = 4e-09
Identities = 22/30 (73%), Positives = 28/30 (93%)
Frame = +1
Query: 31 GQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
G +K++MATNRPDTL+PAL+R GRLDRK+E
Sbjct: 315 GNIKVLMATNRPDTLDPALMRPGRLDRKVE 344
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 54.0 bits (124), Expect = 1e-08
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
VK+IMATNR DTL+PALLR GRLDRKIE P
Sbjct: 301 VKVIMATNRQDTLDPALLRPGRLDRKIEFP 330
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 52.4 bits (120), Expect = 4e-08
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +1
Query: 31 GQVKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
G VKIIMATNR D+L+PAL+R GR+DRKIE P
Sbjct: 321 GDVKIIMATNRIDSLDPALIRPGRIDRKIELP 352
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 50.0 bits (114), Expect = 2e-07
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQ 138
+K+IMATNR D L+PALLR GR+DRKIE P +
Sbjct: 299 IKVIMATNRIDILDPALLRPGRIDRKIEFPAPDE 332
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 50.0 bits (114), Expect = 2e-07
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +1
Query: 31 GQVKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
G VK++MATNR ++L+PAL+R GR+DRKIE P
Sbjct: 326 GDVKVLMATNRIESLDPALIRPGRIDRKIEFP 357
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 48.8 bits (111), Expect = 5e-07
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
+K+I ATNR D L+PALLR+GRLDRKIE P
Sbjct: 317 IKVIAATNRIDVLDPALLRSGRLDRKIELP 346
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQ 138
+K+IMATNR D L+ ALLR GR+DRKIE P +
Sbjct: 294 IKVIMATNRIDILDSALLRPGRIDRKIEFPAPDE 327
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQ 138
+K+IMATNR D L+ ALLR GR+DRKIE P +
Sbjct: 315 IKVIMATNRIDILDSALLRPGRIDRKIEFPAPDE 348
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ G G+V +I ATNR DTL+PAL R GR DR++
Sbjct: 524 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDREL 559
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ G G+V +I ATNR DTL+PAL R GR DR++
Sbjct: 522 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDREL 557
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ G G+V +I ATNR DTL+PAL R GR DR++
Sbjct: 524 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDREL 559
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ G G+V +I ATNR DTL+PAL R GR DR++
Sbjct: 524 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDREL 559
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ G G+V +I ATNR DTL+PAL R GR DR++
Sbjct: 522 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDREL 557
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ G G+V +I ATNR DTL+PAL R GR DR++
Sbjct: 524 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDREL 559
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
M+ G G+V +I ATNR DTL+PAL R GR DR++
Sbjct: 524 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDREL 559
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQTS 144
M+ V II ATNRPD ++PA+LR GRLD+ I P + S
Sbjct: 615 MDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEAS 659
Score = 38.7 bits (86), Expect = 5e-04
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
M+ +G + +I ATNRP++++ AL R GR DR+I+
Sbjct: 338 MDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREID 374
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQTS 144
M+ V II ATNRPD ++PA+LR GRLD+ I P + S
Sbjct: 613 MDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEAS 657
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
M+ + V +I ATNRP++++ AL R GR DR+I+
Sbjct: 337 MDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREID 373
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQTS 144
M+ V II ATNRPD ++PA+LR GRLD+ I P + S
Sbjct: 613 MDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEAS 657
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
M+ + V +I ATNRP++++ AL R GR DR+I+
Sbjct: 337 MDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREID 373
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 39.1 bits (87), Expect = 4e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 34 QVKIIMATNRPDTLEPALLRTGRLDRKI 117
+V ++ ATNRPD L+ ALLR GRLDR I
Sbjct: 596 RVILLAATNRPDQLDSALLRPGRLDRAI 623
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDR 111
M+ G +V +I ATNRPD ++ A+LR GRLD+
Sbjct: 662 MDGVEGRQKVFLIGATNRPDIVDAAILRPGRLDK 695
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDR 111
M+ G +V +I ATNRPD ++ A+LR GRLD+
Sbjct: 662 MDGVEGRQKVFLIGATNRPDIVDAAILRPGRLDK 695
Score = 29.1 bits (62), Expect = 0.44
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 16 SARGLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
+A G G V +I T+RPD ++ L RTGR +I
Sbjct: 365 TAAGAG-VLVIGTTSRPDAVDGRLRRTGRFQNEI 397
>AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical
protein Y108F1.1 protein.
Length = 238
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 25 GLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
G G V ++ +TNR D L+ ALLR GR DR I
Sbjct: 72 GNGAVVVLASTNRADVLDKALLRPGRFDRHI 102
>AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical
protein Y47C4A.1 protein.
Length = 238
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 25 GLGQVKIIMATNRPDTLEPALLRTGRLDRKI 117
G G V ++ +TNR D L+ ALLR GR DR I
Sbjct: 72 GNGAVVVLASTNRADVLDKALLRPGRFDRHI 102
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDP 126
V +I ATNR D L+ ALLR GR DR+I P
Sbjct: 434 VIVIAATNRVDILDSALLRPGRFDRQIYVP 463
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 33.9 bits (74), Expect = 0.015
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKI 117
V ++ +TNR D L+ ALLR GR DR I
Sbjct: 430 VVVLASTNRADVLDKALLRPGRFDRHI 456
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 33.9 bits (74), Expect = 0.015
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKI 117
V ++ +TNR D L+ ALLR GR DR I
Sbjct: 430 VVVLASTNRADVLDKALLRPGRFDRHI 456
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 33.1 bits (72), Expect = 0.027
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQT 141
M+ L + +I TNR D ++ ALLR GRL+ ++E +T
Sbjct: 435 MDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDET 478
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 33.1 bits (72), Expect = 0.027
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQT 141
M+ L + +I TNR D ++ ALLR GRL+ ++E +T
Sbjct: 435 MDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDET 478
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 33.1 bits (72), Expect = 0.027
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 10 MNSARGLGQVKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQT 141
M+ L + +I TNR D ++ ALLR GRL+ ++E +T
Sbjct: 369 MDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDET 412
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 33.1 bits (72), Expect = 0.027
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 43 IIMATNRPDTLEPALLRTGRLDRKIEDP 126
+I ATNR D L+ ALLR GR D ++ P
Sbjct: 340 VIAATNRVDDLDKALLRPGRFDVRVTVP 367
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 32.7 bits (71), Expect = 0.035
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 28 LGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
L +V ++ ATNRPD L+ +L+ GR D+ +E
Sbjct: 597 LTKVFVMGATNRPDLLDNSLMTPGRFDKLVE 627
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 32.7 bits (71), Expect = 0.035
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 28 LGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
L +V ++ ATNRPD L+ +L+ GR D+ +E
Sbjct: 597 LTKVFVMGATNRPDLLDNSLMTPGRFDKLVE 627
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 32.7 bits (71), Expect = 0.035
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 28 LGQVKIIMATNRPDTLEPALLRTGRLDRKIE 120
L +V ++ ATNRPD L+ +L+ GR D+ +E
Sbjct: 597 LTKVFVMGATNRPDLLDNSLMTPGRFDKLVE 627
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 31.5 bits (68), Expect = 0.082
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 49 MATNRPDTLEPALLRTGRLDRK 114
M TN + L+PAL+R GR+DRK
Sbjct: 303 MTTNYVERLDPALIRPGRVDRK 324
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 31.5 bits (68), Expect = 0.082
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 49 MATNRPDTLEPALLRTGRLDRK 114
M TN + L+PAL+R GR+DRK
Sbjct: 349 MTTNYVERLDPALIRPGRVDRK 370
>U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid
transporter protein 2 protein.
Length = 483
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 131 LVGSSIFLSNRPVLSRAGSRVSGLLVAII 45
++GS IF+S + VL AGS LL+ ++
Sbjct: 32 IIGSGIFVSPKGVLLEAGSAGMSLLIWLL 60
>Z95619-2|CAB09114.1| 450|Caenorhabditis elegans Hypothetical
protein H21P03.3a protein.
Length = 450
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 9 HEFGTRLGSGQDNNGDQQTGHPRAGSAQNRTVGQED 116
H++ T GS D+NGD++ G+A + Q D
Sbjct: 7 HQY-TNYGSIADDNGDEEKAENSEGAAAEKVEKQHD 41
>AC006708-19|AAF60423.3| 588|Caenorhabditis elegans Mtm
(myotubularin) family protein 1 protein.
Length = 588
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 9 HEFGTRLGSGQDNNGD 56
H+FG R+G G DN D
Sbjct: 419 HKFGERIGHGDDNYSD 434
>AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical
protein Y54G2A.27 protein.
Length = 229
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 50 WRPTDRTPSSRLCSEPDGWTGRSKIPLANKQARVGN 157
W P+ +P S C GW+ S PL+ +AR +
Sbjct: 195 WSPS--SPHSVHCHRRVGWSSSSSSPLSRCRARAAH 228
>Z93391-8|CAB07684.2| 397|Caenorhabditis elegans Hypothetical
protein W04G5.8 protein.
Length = 397
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 37 VKIIMATNRPDTLEPALLRTGRLDRKIEDPTSQQTS*SWKF 159
+K ++ PD +P +L+ LD+KI T SW+F
Sbjct: 40 IKDMIGVLNPDKPDPVMLKLIELDKKI---TQLSDKMSWEF 77
>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
protein C36B1.8b protein.
Length = 1052
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 159 EFPTLACLLASGIFDLPVQPSGSEQSRLEGVRSVGRHYYLDLTQASCRIH 10
EF L+ ++ S PVQPS S +R +GR + S IH
Sbjct: 687 EFEPLSGVMGSRFESNPVQPSPSVPGTFFIIRFIGRQIEKNDNLFSLEIH 736
>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
protein C36B1.8a protein.
Length = 1049
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 159 EFPTLACLLASGIFDLPVQPSGSEQSRLEGVRSVGRHYYLDLTQASCRIH 10
EF L+ ++ S PVQPS S +R +GR + S IH
Sbjct: 687 EFEPLSGVMGSRFESNPVQPSPSVPGTFFIIRFIGRQIEKNDNLFSLEIH 736
>Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical
protein F27C8.1 protein.
Length = 493
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 185 GYGSSVDLQNFQL*LVCWLVGSSIFLSNRPVLSRAGSRVSGLLVAII 45
G S+ L N +V ++GS IF+S V +AGS L+V +I
Sbjct: 27 GLEKSLTLFNGVSMIVGCIIGSGIFVSPTGVQEQAGSVGLSLIVWLI 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,457,294
Number of Sequences: 27780
Number of extensions: 73428
Number of successful extensions: 250
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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