Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D09
(182 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 0.57
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 0.57
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 24 2.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 23 4.0
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 23 5.3
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 5.3
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 23 5.3
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 23 5.3
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 23 5.3
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 22 9.3
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 22 9.3
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 0.57
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 63 HHNYTLSNAPPYFSL---FHNHPKKNSCSLIMLWC 158
H Y+L N PP+ +L FHN P K + L+ L C
Sbjct: 501 HAIYSLVNRPPFATLGHVFHNTPMK-AIGLLNLIC 534
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 0.57
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 24 LFHYMIKNTKLYKHHNYTLSNAPPYFSLFHN 116
+FHY+IK K TL+N P F F+N
Sbjct: 350 VFHYLIKAQAEPKTTKVTLTNLPYEFVRFNN 380
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 81 SNAPPYFSLFHNHPKKNSCSLIMLW 155
SNA FSL+HN P +LW
Sbjct: 298 SNASSNFSLWHNEPLAEPVVQNVLW 322
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 72 YTLSNAPPYFSLFHNHPKKNSCSLIMLW 155
Y N P+F NH NS S + W
Sbjct: 125 YASLNTTPHFPQVSNHAPNNSNSPSLTW 152
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 23.0 bits (47), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 77 TLKCSTILFIISQSSKKKQLFLNYALVYLPQ 169
T K F+IS + K +N AL Y PQ
Sbjct: 253 TAKTDKDRFVISGGAFKNDDIVNVALKYFPQ 283
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 81 SNAPPYFSLFHNHPKKNSCSLIMLW 155
S P F +H+ K SC M W
Sbjct: 71 SEENPNFESYHSKVGKKSCKRFMRW 95
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 24 LFHYMIKNTKLYKHHNYTLSNAPPYFSLFHN 116
LF Y I +K + + SN P S + N
Sbjct: 198 LFQYFINRSKWHMKQSNIFSNVPHESSFYRN 228
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 23.0 bits (47), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 108 IMKSMVEHLRVCSYGVYIILYF*SYNEINKLNVSK 4
I+ SMV +++ SY V Y Y+ +NKL K
Sbjct: 171 ILHSMVILMKLHSYNVVNGWYSYCYHSLNKLQSKK 205
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 23.0 bits (47), Expect = 5.3
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -2
Query: 67 WCLYNFVF 44
WC++NFVF
Sbjct: 381 WCIFNFVF 388
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 22.2 bits (45), Expect = 9.3
Identities = 5/12 (41%), Positives = 9/12 (75%)
Frame = +3
Query: 129 NSCSLIMLWCIC 164
N C L+++W +C
Sbjct: 130 NFCKLVLVWTVC 141
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 42 KNTKLYKHHNYTLS 83
KN +LY+ H Y+LS
Sbjct: 81 KNFRLYRLHTYSLS 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,193
Number of Sequences: 5004
Number of extensions: 14341
Number of successful extensions: 37
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -