Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D09
         (182 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0619 - 4640149-4640463,4641216-4641458                           28   1.2  
06_03_0587 + 22555414-22557231                                         27   2.8  
01_03_0241 - 14111286-14111935,14111992-14112115                       27   2.8  
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    26   3.7  
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677...    26   4.9  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    25   6.5  
11_06_0181 + 20985960-20987825,20987904-20989169                       25   8.6  
06_03_0588 + 22567820-22570802,22570917-22571269                       25   8.6  

>02_01_0619 - 4640149-4640463,4641216-4641458
          Length = 185

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 108 FHNHPKKNSCSLIMLWC---ICPKCEA 179
           FH H KKN  ++  L C   ICP C A
Sbjct: 21  FHEHAKKNEKNICCLDCCTSICPHCVA 47


>06_03_0587 + 22555414-22557231
          Length = 605

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 33  YMIKNTKLYKHHNYTLSNAPPYFSLFHN 116
           Y+    KLY  +NY   N PP     H+
Sbjct: 512 YLHNMNKLYMDYNYLTGNIPPTIGYLHS 539


>01_03_0241 - 14111286-14111935,14111992-14112115
          Length = 257

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 76  HSQM-LHHTFHYFTIIQKK 129
           HS + LHH+ HY  IIQK+
Sbjct: 7   HSSIPLHHSIHYHCIIQKR 25


>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 6   LKRLTYLFHYMIKNTKLYKHHNYTLSNAPPYFSLF 110
           LK+LT    Y+++ T  + + NY   N+PP F L+
Sbjct: 139 LKQLTRGGKYLVRAT--FGYGNYDAFNSPPAFDLY 171


>02_03_0199 +
           16263549-16263644,16264941-16265899,16267140-16267791,
           16267895-16267981,16268253-16268381,16269990-16270036,
           16271337-16271438,16272720-16272843,16272981-16273028,
           16273934-16274026,16274325-16274408,16274536-16274619,
           16274751-16274819,16275531-16275590,16275946-16276017,
           16276957-16277064,16278162-16278238,16278391-16278474,
           16278617-16278728,16278778-16278810,16278811-16278900,
           16279012-16279077,16279163-16279258,16279446-16279497,
           16279723-16279775,16279998-16280018
          Length = 1165

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +3

Query: 33  YMIKNTKLYKHHNYTLSNAPPYFSLFHNHPKKN----SCSLI 146
           ++I+N  L+ + N          SLFH   KK     SCS+I
Sbjct: 115 FLIRNKSLFGNPNMRREEGSDMHSLFHRSEKKKSTLPSCSII 156


>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
            24665465-24665887,24665960-24666252,24666332-24666605,
            24666856-24667358,24667464-24667785,24667875-24668220,
            24668339-24668997,24669524-24669625,24669656-24670052,
            24670155-24670270,24670360-24670386
          Length = 1704

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 86   CSTILFIISQSSKKKQLFLNYALVYL 163
            C +ILF + Q +K  Q +L+ +L+YL
Sbjct: 1662 CYSILFTLFQLTKGAQDYLSTSLIYL 1687


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 132 SCSLIMLWCICPKCE 176
           S S+++ W ICP C+
Sbjct: 162 SASVLVFWTICPHCQ 176


>06_03_0588 + 22567820-22570802,22570917-22571269
          Length = 1111

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 54  LYKHHNYTLSNAPPYFSLFHN 116
           LY  +NY   N PP     HN
Sbjct: 494 LYMDYNYLTGNIPPTIGYLHN 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,679,184
Number of Sequences: 37544
Number of extensions: 70912
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)