Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D09
         (182 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034696-1|AAH34696.1|  294|Homo sapiens syntaxin 19 protein.          29   2.0  
AF461456-1|AAQ04780.1|  294|Homo sapiens syntaxin 19 protein.          29   2.0  
L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subuni...    29   3.5  
CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.               29   3.5  
CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.               29   3.5  
BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit prot...    29   3.5  
AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit prot...    29   3.5  
AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation c...    29   3.5  

>BC034696-1|AAH34696.1|  294|Homo sapiens syntaxin 19 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 78  LSNAPPYFSLFHNHPKKNSCSLIMLWCICPKCEA 179
           ++N    F L   + K+N C ++  WC CP C +
Sbjct: 261 VNNTKEKFGLAVKYKKRNPCRVLCCWC-CPCCSS 293


>AF461456-1|AAQ04780.1|  294|Homo sapiens syntaxin 19 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 78  LSNAPPYFSLFHNHPKKNSCSLIMLWCICPKCEA 179
           ++N    F L   + K+N C ++  WC CP C +
Sbjct: 261 VNNTKEKFGLAVKYKKRNPCRVLCCWC-CPCCSS 293


>L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subunit
           protein.
          Length = 96

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 180 MLHIWGKYTRA 148
           MLHIWGKYTR+
Sbjct: 86  MLHIWGKYTRS 96


>CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 180 MLHIWGKYTRA 148
           MLHIWGKYTR+
Sbjct: 86  MLHIWGKYTRS 96


>CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 180 MLHIWGKYTRA 148
           MLHIWGKYTR+
Sbjct: 86  MLHIWGKYTRS 96


>BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 180 MLHIWGKYTRA 148
           MLHIWGKYTR+
Sbjct: 86  MLHIWGKYTRS 96


>AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 180 MLHIWGKYTRA 148
           MLHIWGKYTR+
Sbjct: 86  MLHIWGKYTRS 96


>AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation
           complex beta variant protein.
          Length = 96

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 180 MLHIWGKYTRA 148
           MLHIWGKYTR+
Sbjct: 86  MLHIWGKYTRS 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,659,670
Number of Sequences: 237096
Number of extensions: 432522
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 76,859,062
effective HSP length: 40
effective length of database: 67,375,222
effective search space used: 1347504440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)