Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D09
(182 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 26 0.036
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 26 0.036
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 21 1.8
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 20 2.4
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 19 4.1
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 19 4.1
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 19 5.5
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 19 5.5
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 19 7.2
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 19 7.2
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 19 7.2
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 19 7.2
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 26.2 bits (55), Expect = 0.036
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -3
Query: 180 MLHIWGKYTRA*LRNNCF--FLDDCEIMKSMVEHLRVCSYG---VYIILYF 43
+L +WG+YT C FL D E K V + + +Y ++IIL++
Sbjct: 190 LLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFY 240
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 26.2 bits (55), Expect = 0.036
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -3
Query: 180 MLHIWGKYTRA*LRNNCF--FLDDCEIMKSMVEHLRVCSYG---VYIILYF 43
+L +WG+YT C FL D E K V + + +Y ++IIL++
Sbjct: 190 LLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFY 240
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 20.6 bits (41), Expect = 1.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 33 YMIKNTKLYKHHNYTLSNAPPYFSLFHNHPKKNSCSL 143
++ KN + H+ + N P + N P+ N+CS+
Sbjct: 138 FIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSI 174
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 55 YINTITTHSQMLHHTFHYFTIIQKKTV 135
++N + L+H F T+ + KTV
Sbjct: 78 FLNAKVSEIAALNHKFSSVTLYRNKTV 104
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 19.4 bits (38), Expect = 4.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +1
Query: 43 KIQNYINTITTHSQMLHHTFHY 108
KI+ + ++ H Q+L F Y
Sbjct: 293 KIKKAVPPLSLHGQLLWREFFY 314
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1
Query: 77 CVVMVFI*FCIF 42
C++MVF+ + IF
Sbjct: 356 CIIMVFLYYNIF 367
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 19.0 bits (37), Expect = 5.5
Identities = 8/27 (29%), Positives = 10/27 (37%)
Frame = +3
Query: 42 KNTKLYKHHNYTLSNAPPYFSLFHNHP 122
+ K K H N PY + HP
Sbjct: 59 RRMKWKKEHKMASMNIVPYHMSPYGHP 85
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 19.0 bits (37), Expect = 5.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 77 TLKCSTILFIISQSSKKKQLFLN 145
TL + ++ SSK +LFL+
Sbjct: 117 TLTSENVEILLEHSSKLVELFLS 139
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 18.6 bits (36), Expect = 7.2
Identities = 5/17 (29%), Positives = 11/17 (64%)
Frame = +3
Query: 36 MIKNTKLYKHHNYTLSN 86
+++NT+ ++HN N
Sbjct: 413 LMRNTRCGRYHNQNAGN 429
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 18.6 bits (36), Expect = 7.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 96 YFSLFHNHP 122
YF L HN+P
Sbjct: 232 YFMLNHNYP 240
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 18.6 bits (36), Expect = 7.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 96 YFSLFHNHP 122
YF L HN+P
Sbjct: 232 YFMLNHNYP 240
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 18.6 bits (36), Expect = 7.2
Identities = 7/31 (22%), Positives = 13/31 (41%)
Frame = +3
Query: 30 HYMIKNTKLYKHHNYTLSNAPPYFSLFHNHP 122
H++ + LY+ Y + P + HP
Sbjct: 74 HHLHHHQVLYQQSPYLMYENPDEEKRYQEHP 104
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,179
Number of Sequences: 438
Number of extensions: 1130
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used: 2576460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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