Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D08
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   1.1  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    24   5.6  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    24   5.6  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    23   7.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    23   9.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.9  

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   HEVCEIQYRDAIFFFTKC 55
           H +C I+Y  AI FF+ C
Sbjct: 249 HLLCTIEYEKAIVFFSSC 266


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 127 VNINKLCPSIQKHFRKNCMKCTYITFCKKKNCI 29
           +N + +   +Q   + N       TFC KK+CI
Sbjct: 236 LNRDSIVEFLQSSIKDNNFSEYLATFCSKKSCI 268


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 88  FRKNCMKCTYITFCKKKNCISILDFAYLV 2
           F+K   K T++   + K  + ++DF YL+
Sbjct: 611 FKKTEKKVTWLADTEDKTPVDLVDFDYLI 639


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 58  ITFCKKKNCISILDFAYLV 2
           +  CKK N +SI+D A+ +
Sbjct: 180 VKLCKKYNIVSIIDGAHAI 198


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 2   HEVCEIQYRDAIFFFTKCYVCTFHAILSEVFLYR 103
           H++ EI+Y+ +    T+      H++ SE+ L +
Sbjct: 689 HQIGEIEYQKSSCVITESDTVKLHSLESEISLLK 722


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 230 PNNRHTAMFSDEIEH 186
           PN+RHT+ F D + +
Sbjct: 292 PNHRHTSFFGDTLSN 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,572
Number of Sequences: 5004
Number of extensions: 21906
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)