Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D08
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   2.0  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   2.0  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    26   6.0  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    26   6.0  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    25   7.9  

>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 76  CMKCTYITFCKKKNCISI 23
           C+K TY+   +KKNC+ I
Sbjct: 555 CIKLTYLNLTRKKNCLLI 572


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 124  NINKLCPSIQKHFRKNCMKCTYITFCKK 41
            N+ K+C    K+ +K C KC     CKK
Sbjct: 1284 NVQKMCKKCAKNVQKMCKKCA--KMCKK 1309


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 279 QSWESSPTELTQSSYESKQPAHGDV 205
           + W+    +LT S  ES+  A GDV
Sbjct: 686 EPWDEENVDLTDSESESRNAASGDV 710


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 279 QSWESSPTELTQSSYESKQPAHGDV 205
           + W+    +LT S  ES+  A GDV
Sbjct: 686 EPWDEENVDLTDSESESRNAASGDV 710


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 60  YVHFMQFFLKCFCIEGHNLLILTS 131
           Y +F  +F  CFC EG   L+ +S
Sbjct: 35  YPNFNLYFWPCFCFEGSRDLLRSS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,981,102
Number of Sequences: 27780
Number of extensions: 127036
Number of successful extensions: 268
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)