Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D08
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   5.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 103 SIQKHFRKNCMKCTYITFCKKKNC 32
           +I  + R N +KC+ + F + KNC
Sbjct: 73  TITSYHRIN-LKCSLVEFSENKNC 95


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 225 VWIHSCSVLVL*EKIPMTVI 284
           VW+ SCSV V    +   V+
Sbjct: 278 VWMSSCSVFVFLSLMEFAVV 297


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 245  CVSSVGEDSHDCYYC 289
            C  S  E  +DCY C
Sbjct: 1057 CFDSDRERLYDCYVC 1071


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +2

Query: 275 DCYYCL 292
           DCYYC+
Sbjct: 322 DCYYCI 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,091
Number of Sequences: 438
Number of extensions: 1518
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)