Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D07
         (225 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DZ22 Cluster: Initiation factor 2 subunit family prot...    34   0.54 
UniRef50_O96170 Cluster: Putative uncharacterized protein PFB037...    32   2.9  
UniRef50_Q22SA5 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  
UniRef50_Q4UMD2 Cluster: Putative lipoprotein; n=1; Rickettsia f...    30   8.8  
UniRef50_Q9FK66 Cluster: Similarity to unknown protein; n=1; Ara...    30   8.8  
UniRef50_Q7RAU2 Cluster: Putative uncharacterized protein PY0640...    30   8.8  

>UniRef50_A2DZ22 Cluster: Initiation factor 2 subunit family
           protein; n=1; Trichomonas vaginalis G3|Rep: Initiation
           factor 2 subunit family protein - Trichomonas vaginalis
           G3
          Length = 356

 Score = 34.3 bits (75), Expect = 0.54
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = +1

Query: 22  HRIRQQITMYSNLTSTYSQKFIQPNQHNKLKLMTFVMNITLL*LVSDIPSPYTDI--DCS 195
           H + Q I+ Y+N TS+ S + +  + H   + +++VM   L  L++D+ +PY DI  + S
Sbjct: 102 HSLLQIISDYTNFTSSNSDELL--SSHELPEDLSYVMKSQLEELMNDLSNPYPDIAKNAS 159

Query: 196 DF 201
           D+
Sbjct: 160 DY 161


>UniRef50_O96170 Cluster: Putative uncharacterized protein PFB0375w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0375w - Plasmodium falciparum
           (isolate 3D7)
          Length = 1802

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 36  TNYDVFKSYKHI*SKVYSTKSAQQTEIDDFRNEHNI 143
           TNY V+KSY H    +   ++ +  +ID+  N+ +I
Sbjct: 39  TNYHVYKSYIHTKENIIKVEAKENVDIDNINNKDDI 74


>UniRef50_Q22SA5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1334

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 4   QNNLFKHRIRQQITMYSNLTSTYSQKFIQPNQHNKLKLMTF 126
           Q N   H++ Q++ +Y N  +   QK+ Q +Q NKLK   F
Sbjct: 413 QINSLNHQL-QKLLIYENEKNLQQQKYFQKDQKNKLKQFKF 452


>UniRef50_Q4UMD2 Cluster: Putative lipoprotein; n=1; Rickettsia
           felis|Rep: Putative lipoprotein - Rickettsia felis
           (Rickettsia azadi)
          Length = 138

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 207 FRKVTAVNICIWTGYITYQLQ*CYVHYESH 118
           F  VT +N+  W G+I   L   Y  Y SH
Sbjct: 96  FNSVTLINVLFWPGFIVDALSGSYKKYPSH 125


>UniRef50_Q9FK66 Cluster: Similarity to unknown protein; n=1;
           Arabidopsis thaliana|Rep: Similarity to unknown protein
           - Arabidopsis thaliana (Mouse-ear cress)
          Length = 425

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 7   NNLFKHRIRQQITMYSNLTS-TYSQKFIQPNQHNKLKLMTFVMNITL 144
           NN  K  IR  IT   NL S   S   +     NK+K +TF+ N++L
Sbjct: 202 NNSLKGSIRISITRLKNLKSLNLSHNSLSGQIPNKIKSLTFLKNLSL 248


>UniRef50_Q7RAU2 Cluster: Putative uncharacterized protein PY06407;
           n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY06407 - Plasmodium yoelii yoelii
          Length = 788

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   NNLFKHRIRQQITMYSNLTSTYSQKFIQPNQH 102
           NN + H    Q  MY+N +  YS  F  PN++
Sbjct: 146 NNNYMHNSNSQTPMYANKSYLYSSNFRDPNEN 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,032,395
Number of Sequences: 1657284
Number of extensions: 3296075
Number of successful extensions: 10016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10013
length of database: 575,637,011
effective HSP length: 53
effective length of database: 487,800,959
effective search space used: 10243820139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)