Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D07
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 2.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 3.1
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 23 5.4
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 23 5.4
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 23 5.4
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 23 5.4
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 23 7.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 23 7.2
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 23 7.2
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 22 9.5
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 22 9.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 22 9.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 22 9.5
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 22 9.5
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 22 9.5
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 22 9.5
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 218 FFMYSGKSLQSISVYGLGISLTNYSNVMFITKVINFSLL 102
F Y L+S+ LG+SL + N++ + V+ FSL+
Sbjct: 38 FEKYETSFLKSLFNGNLGLSLPSAINILTLIIVLYFSLV 76
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 55 NLTSTYSQKFIQPNQHNKLKLM 120
N+ T S+ F NQ+ KLK+M
Sbjct: 2137 NIEQTLSKNFFGNNQYLKLKIM 2158
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 102 QQTEIDDFRNEHNITVIGK*YTQSIY 179
+Q EI FR EH VIG+ +Y
Sbjct: 53 KQAEIKKFRAEHGQDVIGEVTINQMY 78
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 23.0 bits (47), Expect = 5.4
Identities = 5/12 (41%), Positives = 10/12 (83%)
Frame = -3
Query: 184 YLYMDWVYHLPI 149
Y+Y W++H+P+
Sbjct: 229 YVYDKWIFHIPL 240
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 1 HQNNLFKHRIRQQITMYSNLTSTYS 75
H + KH+I +Q+ Y + +TY+
Sbjct: 474 HHGSSKKHKIAEQLMSYDIVLTTYN 498
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 163 IPSPYTDIDCSDFP-EYIKN 219
IPSP+ CSD+P Y+ N
Sbjct: 113 IPSPWMYTRCSDWPLSYLPN 132
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 163 IPSPYTDIDCSDFPEYIK 216
+P P DID ++F E+ K
Sbjct: 309 LPRPRNDIDAAEFFEFCK 326
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 16 FKHRIRQQITMYSNLTSTYSQKFIQPNQHNKL 111
F R + + SNL S Y +KF +P Q +L
Sbjct: 198 FFTRSSESVENASNLISDYLKKFGKPRQSIEL 229
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 22.6 bits (46), Expect = 7.2
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 175 YTDIDCSDFPEYIKNYL 225
+ D++C D PE+ ++++
Sbjct: 212 FYDLNCQDIPEFFEDHM 228
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 166 PSPYTDIDCSDFPEYI 213
P P TD +CSD+ I
Sbjct: 26 PIPSTDYECSDYASTI 41
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 175 YTDIDCSDFPEYIKNYL 225
Y +DC +YIKN +
Sbjct: 118 YAHVDCPGHADYIKNMI 134
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 152 NYSNVMFITKVINFSL 105
NYSNV T +IN SL
Sbjct: 517 NYSNVCLSTSLINRSL 532
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 157 SDIPSPYTDIDC-SDFPEYIKNY 222
S+ P PY +DC S F + I+ +
Sbjct: 1766 SEFPPPYNTVDCRSKFVKTIQQH 1788
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 154 VSDIPSPYTDIDCSD 198
+SDIPSP + CS+
Sbjct: 391 ISDIPSPGSSTTCSN 405
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 7 NNLFKHRIRQQITMYSNLTSTYSQKFIQPNQHNKL 111
N++FKH Q + + ++++ I NKL
Sbjct: 81 NDMFKHVYSQNVELNHKTQVDFTEQLIPKKSLNKL 115
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 168 GYITYQLQ*CYVHYESH 118
GY Y L+ C++H ES+
Sbjct: 377 GYCPYGLRCCFLHDESN 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 944,165
Number of Sequences: 5004
Number of extensions: 15907
Number of successful extensions: 46
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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