Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D07
(225 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr... 29 0.45
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr... 29 0.45
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 27 1.8
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 27 1.8
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 27 1.8
AC024840-2|AAX55682.1| 434|Caenorhabditis elegans Hypothetical ... 27 1.8
AC024840-1|AAF59619.2| 427|Caenorhabditis elegans Hypothetical ... 27 1.8
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 27 2.4
M77697-1|AAA27896.3| 273|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF003146-4|AAB54200.2| 650|Caenorhabditis elegans Hypothetical ... 26 4.1
Z68493-8|CAA92795.1| 336|Caenorhabditis elegans Hypothetical pr... 25 7.2
AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical ... 25 7.2
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 25 9.6
AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical ... 25 9.6
AF381629-1|AAL12002.1| 223|Caenorhabditis elegans homeodomain p... 25 9.6
AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain p... 25 9.6
AF039053-11|AAC25879.1| 301|Caenorhabditis elegans Serpentine r... 25 9.6
>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
protein T05C1.4b protein.
Length = 1163
Score = 29.1 bits (62), Expect = 0.45
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 14 YSSIEFGNKLRCIQILQAHIVKSLFNQISTTN*N 115
YSSIE C++ L A+IV+ + N++S+ N N
Sbjct: 529 YSSIENIQSSSCMESLLANIVQQIDNEVSSQNLN 562
>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
protein T05C1.4a protein.
Length = 1185
Score = 29.1 bits (62), Expect = 0.45
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 14 YSSIEFGNKLRCIQILQAHIVKSLFNQISTTN*N 115
YSSIE C++ L A+IV+ + N++S+ N N
Sbjct: 529 YSSIENIQSSSCMESLLANIVQQIDNEVSSQNLN 562
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 22 HRIRQQITMYSNLTSTYSQKFIQPNQHNKLKL 117
HR+ ++ M + LT + +F+Q N HN L
Sbjct: 826 HRMFPRLRMITELTHATNMRFVQFNPHNAYSL 857
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 22 HRIRQQITMYSNLTSTYSQKFIQPNQHNKLKL 117
HR+ ++ M + LT + +F+Q N HN L
Sbjct: 847 HRMFPRLRMITELTHATNMRFVQFNPHNAYSL 878
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 22 HRIRQQITMYSNLTSTYSQKFIQPNQHNKLKL 117
HR+ ++ M + LT + +F+Q N HN L
Sbjct: 847 HRMFPRLRMITELTHATNMRFVQFNPHNAYSL 878
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 22 HRIRQQITMYSNLTSTYSQKFIQPNQHNKLKL 117
HR+ ++ M + LT + +F+Q N HN L
Sbjct: 847 HRMFPRLRMITELTHATNMRFVQFNPHNAYSL 878
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 22 HRIRQQITMYSNLTSTYSQKFIQPNQHNKLKL 117
HR+ ++ M + LT + +F+Q N HN L
Sbjct: 847 HRMFPRLRMITELTHATNMRFVQFNPHNAYSL 878
>AC024840-2|AAX55682.1| 434|Caenorhabditis elegans Hypothetical
protein Y59H11AL.1b protein.
Length = 434
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 175 MDWVYHL-PITVMLCSLRKSSISVCC 101
M+ +YHL P MLC L S + VCC
Sbjct: 39 MNHIYHLTPSMKMLCILFYSILCVCC 64
>AC024840-1|AAF59619.2| 427|Caenorhabditis elegans Hypothetical
protein Y59H11AL.1a protein.
Length = 427
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 175 MDWVYHL-PITVMLCSLRKSSISVCC 101
M+ +YHL P MLC L S + VCC
Sbjct: 39 MNHIYHLTPSMKMLCILFYSILCVCC 64
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 27 NSATNYDVFKSYKHI*SKVYSTKSAQQT 110
N AT+YD + + +H ++ YST QT
Sbjct: 886 NQATHYDAYATSQHSNAQEYSTVHGSQT 913
>M77697-1|AAA27896.3| 273|Caenorhabditis elegans Hypothetical
protein B0303.2 protein.
Length = 273
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +2
Query: 17 SSIEFGNK-LRCIQILQAHIVKSL-FNQISTT 106
++ FG K RC ++ QAHI++SL N ++TT
Sbjct: 221 TTYNFGGKTFRCHRLKQAHIIESLKANGMATT 252
>AF003146-4|AAB54200.2| 650|Caenorhabditis elegans Hypothetical
protein F56F4.3 protein.
Length = 650
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 193 CSQYLYMDWVYHLPIT--VMLCSL 128
C +LY+ W + LPI+ V +CS+
Sbjct: 555 CRVFLYVMWAFFLPISCLVSICSI 578
>Z68493-8|CAA92795.1| 336|Caenorhabditis elegans Hypothetical
protein C33A12.11 protein.
Length = 336
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 199 SHCSQYL-YMDWVYHLPITVMLCSLRK 122
+H S YL + W Y LP V++C + K
Sbjct: 25 NHFSTYLAIIPWFYMLPSFVIICKILK 51
>AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical
protein ZK484.7 protein.
Length = 344
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -3
Query: 217 FLCIQ---ESHCSQYLYMDWVYHLPITVMLCSLRKSSISVCC 101
F+C Q + C+ + YM + MLC++ + CC
Sbjct: 121 FICTQAPLDKSCADFWYMCLQEKVDSIFMLCNIMEKGAKKCC 162
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
protein F46C3.3 protein.
Length = 2557
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 24 SNSATNYDVFKSYKHI*SKVYSTKSAQQTEIDDF 125
S S +Y+VFK++K++ S+ S S + + +F
Sbjct: 92 SGSGKSYNVFKAFKYLTSQPKSKVSTKHSSSIEF 125
>AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical
protein Y113G7A.6a protein.
Length = 391
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 28 IRQQITMYSNLTSTYSQKFIQPNQ-HNKLKLMTFVMNIT 141
+ QQ+ + LTS YS + P+ + +L M+++ N++
Sbjct: 90 LSQQLAQGATLTSPYSTTTVDPSSLYFQLSPMSYIPNVS 128
>AF381629-1|AAL12002.1| 223|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 223
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 28 IRQQITMYSNLTSTYSQKFIQPNQ-HNKLKLMTFVMNIT 141
+ QQ+ + LTS YS + P+ + +L M+++ N++
Sbjct: 53 LSQQLAQGATLTSPYSTTTVDPSSLYFQLSPMSYIPNVS 91
>AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 372
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 28 IRQQITMYSNLTSTYSQKFIQPNQ-HNKLKLMTFVMNIT 141
+ QQ+ + LTS YS + P+ + +L M+++ N++
Sbjct: 71 LSQQLAQGATLTSPYSTTTVDPSSLYFQLSPMSYIPNVS 109
>AF039053-11|AAC25879.1| 301|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 19 protein.
Length = 301
Score = 24.6 bits (51), Expect = 9.6
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -1
Query: 222 IIFYVFRKVTAVNICIWTGYITYQLQ*CYVHYESHQFQFVVLIWLNKLLTICACKI*IHR 43
I+ YVF +NI + + C+ HY +HQ I LL +CA K+ I
Sbjct: 145 IVLYVFCNFK-LNIPKNCAALGCAMNTCFFHYWTHQKSVTFTITFVCLLLLCA-KLFIFN 202
Query: 42 NLLPNSMLE 16
L N E
Sbjct: 203 ELGRNGRKE 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,088,441
Number of Sequences: 27780
Number of extensions: 86735
Number of successful extensions: 274
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -