Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D06
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   1.0  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   1.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   3.2  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    23   7.4  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    23   7.4  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    23   7.4  

>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 122 ANEDEGKLELFSGVVIEKDASGENK 196
           +  D+G L+LF    +EK+  G+N+
Sbjct: 55  SENDDGTLDLFGDSELEKEQKGDNQ 79


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 117 HGAPLQATTMHNTKHNTRIFSKFTLKLSGLYSYASCR 7
           HG P++A+ +++ KH+    ++  +      SY + R
Sbjct: 261 HGVPMRASGINDPKHDLDAATRHNINSVAAASYVAAR 297


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 63   CVYCVWYYA 89
            C +C WYYA
Sbjct: 1166 CTFCCWYYA 1174


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 143 VSLHLHSPPMVHPCK 99
           +S H  SP  V PC+
Sbjct: 173 ISFHFESPQQVEPCQ 187


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +2

Query: 29  NPDNFRVNFEKMRXXXXXXXXXXXXRGAPWAANEDEGKLELFSG 160
           N  N R NF +              R   ++ ++ E K  LF+G
Sbjct: 373 NASNVRTNFSQKTDTKKWGAYKMKSRNLLYSQSQKESKSRLFNG 416


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 61  FLKIYSEVIRIVLLRLVPN 5
           +L+IY+E IR +L+   PN
Sbjct: 190 YLEIYNETIRDLLVSPTPN 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 855,440
Number of Sequences: 5004
Number of extensions: 13855
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)