Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D06
         (196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    27   1.4  
Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   4.3  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   4.3  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    25   5.6  
AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical...    25   7.4  
U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    25   9.8  

>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -3

Query: 161 HQRIAPVSLHLHS-PPMVHPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTP 15
           ++ + P S H  + PP V     PPC    T    +     + P C  TP
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYTP 235


>Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical
           protein F58E6.4 protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 105 GVHHGRRMKMKGNWSYS 155
           GV H R  K K NWS+S
Sbjct: 69  GVSHSRAAKSKSNWSFS 85


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 176 LSQ*QHQRIAPVSLHLHSPP 117
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 176 LSQ*QHQRIAPVSLHLHSPP 117
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 176 LSQ*QHQRIAPVSLHLHSPP 117
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 64  HFLKIYSEVIRIVLLRLVPN 5
           HF +I   ++ IVL+ L+PN
Sbjct: 186 HFFQILQNLVYIVLIALIPN 205


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 107 PCKLPPCIIPNT 72
           PCK PPCII  T
Sbjct: 257 PCKNPPCIIKTT 268


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
 Frame = -3

Query: 161 HQRIAPVSLHLHS-PPMVHPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTP 15
           ++ I PV  H  + PP       PPC    T    +     + P C  TP
Sbjct: 263 YRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCVYTP 312


>AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical
           protein Y51H7C.13 protein.
          Length = 344

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -3

Query: 152 IAPVSLHLHSPPMVHPCKLPPCIIPNTIHAFSQNLL--*SYPDCTLTPRA 9
           + P ++   SPP     K PPCI P T    +        YP  T TP A
Sbjct: 114 VVPPAVSGTSPPAPVDQKPPPCIPPTTTTTTTTTTRPPCPYPPATNTPPA 163


>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 152 IAPVSLHLHSPPMVHPCKLPPCIIPNTI 69
           I P++L     P + P KLP   +P+TI
Sbjct: 207 IIPITLPTIKIPEIVPTKLPTVEVPDTI 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,805,448
Number of Sequences: 27780
Number of extensions: 80632
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)