Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D05
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0146 - 7171656-7172044,7172383-7175008 29 1.4
01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567 28 3.2
07_03_0662 + 20431448-20432767 27 4.3
09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779 27 5.6
02_02_0109 + 6830802-6833412,6833491-6833861 27 5.6
12_01_1077 - 11193337-11193405,11194961-11195122,11195809-111963... 27 7.5
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 27 7.5
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 27 7.5
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739... 27 7.5
02_01_0108 - 789597-790224,790441-790570,790946-791081 26 9.9
01_01_0407 - 3067071-3070085 26 9.9
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 77 LTGPATPKLSRYAPLHNVTVKASNLSYE 160
L+GP P+L +Y+ L N V +NLS E
Sbjct: 347 LSGPLPPELGKYSELGNFEVSNNNLSGE 374
>01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567
Length = 602
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 73 GPDGPGYTEAEPLRAPSQRYCESVKLVV 156
GP G G ++A P APS+ +S+KL V
Sbjct: 71 GPGGSGLSKAPPRSAPSKVALDSLKLPV 98
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 52 GVPTTVRGPDGP--GYTEAEPLRAPSQRYCESVKLVV*EQSVSPQPHR 189
G TV +G G+ PLRA S+R ES+ + + S SP P R
Sbjct: 290 GADVTVVESEGEDHGFHLYSPLRATSRRLMESIVRFINQPSHSPAPLR 337
>09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779
Length = 106
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 200 QLLVRCGCGETDC 162
Q+ VRCGCGE C
Sbjct: 2 QIRVRCGCGEAGC 14
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 77 LTGPATPKLSRYAPLHNVTVKASNLS 154
L+G P+L +++PL N+ V +NLS
Sbjct: 350 LSGSLPPELGKHSPLANLEVSNNNLS 375
>12_01_1077 -
11193337-11193405,11194961-11195122,11195809-11196324,
11198132-11198248,11198376-11198545,11199676-11199757,
11200515-11200624,11201264-11201342
Length = 434
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 327 Y*RTLLLGQCAFKRTLSNNVLL 392
Y + ++G CAFKRTL+ + L+
Sbjct: 61 YSKPRMMGACAFKRTLTTSFLI 82
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 282 SLTAYVRVNAV-VSVLTLTYGV*YRMTHTASGTMWLW 175
SL+ +VNA+ VSV + G + M T+ G +W W
Sbjct: 238 SLSVPSKVNALPVSVAAVACGGFFTMALTSDGQLWSW 274
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 88 GYTEAEPLRAPSQRYCESVKLVV*EQSVSPQPHR 189
G+ PLRA S+R ES+ + + S SP P R
Sbjct: 304 GFHLYSPLRATSRRLMESIVQFINQPSHSPAPLR 337
>02_04_0525 -
23672984-23673085,23673315-23673419,23673820-23673979,
23674085-23674162,23674383-23674524,23674641-23674785,
23674888-23674950,23675042-23675101,23675364-23675441,
23675524-23675598,23675744-23675860,23675960-23676190,
23676300-23676419,23676512-23676588,23676669-23676769,
23676844-23676950,23677094-23677251,23677383-23677599
Length = 711
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 94 TEAEPLRAPSQRYCESV 144
+E PL P Q+YCES+
Sbjct: 66 SEGSPLLVPRQKYCESI 82
>02_01_0108 - 789597-790224,790441-790570,790946-791081
Length = 297
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 4 RGCDEPTGPYEEGLWS 51
R CD+P Y +GLWS
Sbjct: 4 RSCDKPKMNYRKGLWS 19
>01_01_0407 - 3067071-3070085
Length = 1004
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 77 LTGPATPKLSRYAPLHNVTVKASNLSYE 160
LTGP P+L R L ++ + ++ LS E
Sbjct: 868 LTGPIPPQLGRLTQLESLDISSNELSGE 895
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,140,093
Number of Sequences: 37544
Number of extensions: 153314
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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