Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D05
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AL032658-3|CAA21745.1|  152|Caenorhabditis elegans Hypothetical ...    27   6.8  
U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    26   9.0  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    26   9.0  
AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    26   9.0  

>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 95  PKLSRYAPLHNVTVKASNLSYESSPFHHSH 184
           P  + +  +H++  +  NLS +S+  HH+H
Sbjct: 289 PSFTLHMYMHHIANQNPNLSIDSTHIHHTH 318


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 95  PKLSRYAPLHNVTVKASNLSYESSPFHHSH 184
           P  + +  +H++  +  NLS +S+  HH+H
Sbjct: 338 PSFTLHMYMHHIANQNPNLSIDSTHIHHTH 367


>AL032658-3|CAA21745.1|  152|Caenorhabditis elegans Hypothetical
           protein Y76A2B.4 protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 351 VLRVMFVNNNVCMYSAVTSAYILSLT--AYVRVN 256
           +L ++     VC+ SA+ +AYIL LT   Y+R++
Sbjct: 85  ILLILIPTLAVCITSAIATAYILQLTQSIYLRLS 118


>U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical
           protein F12A10.4 protein.
          Length = 658

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 5   EAAMSQQGRTKKDCGLVYQQLSEDLTGPATPKLSRYAPLHNVTVKASNLSYES 163
           E A  +  +TK   G   + L ++L G  TP+ +  + L NV +  +   ++S
Sbjct: 425 EEAQKKFNKTKTVFGFTGEDLIDELVGKITPESNYISTLQNVLLWQTRNMFKS 477


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  KDCGLVYQQLSEDLTGPATP 97
           +DC +V Q + ED  GP +P
Sbjct: 220 EDCNIVKQWMPEDAVGPGSP 239


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
           protein F15E6.1 protein.
          Length = 1655

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  KDCGLVYQQLSEDLTGPATP 97
           +DC +V Q + ED  GP +P
Sbjct: 219 EDCNIVKQWMPEDAVGPGSP 238


>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  KDCGLVYQQLSEDLTGPATP 97
           +DC +V Q + ED  GP +P
Sbjct: 233 EDCNIVKQWMPEDAVGPGSP 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,042,467
Number of Sequences: 27780
Number of extensions: 143133
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)