Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D05
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -3

Query: 194 LVRC-GCGETDCSHTTS 147
           +V C  CG   C+HTT+
Sbjct: 424 IVTCTNCGPNPCTHTTT 440


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -3

Query: 194 LVRC-GCGETDCSHTTS 147
           +V C  CG   C+HTT+
Sbjct: 410 IVTCTNCGPNPCTHTTT 426


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -3

Query: 194 LVRC-GCGETDCSHTTS 147
           +V C  CG   C+HTT+
Sbjct: 444 IVTCTNCGPNPCTHTTT 460


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -3

Query: 194 LVRC-GCGETDCSHTTS 147
           +V C  CG   C+HTT+
Sbjct: 393 IVTCTNCGPNPCTHTTT 409


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 281 DRM*ALVTAEYIHTLLLTNITLRTVC 358
           D    +V  E I +L  TN+TL T C
Sbjct: 610 DMFNCVVVEETIPSLNSTNVTLSTKC 635


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 241 FNLNIRGIVSYDSHSFWYDVAVVKRT 164
           F  +++ I  YD +  W D  +V  T
Sbjct: 132 FKKSVQRIKPYDEYYVWRDARIVNGT 157


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 74  DLTGPATPKLSRY 112
           D+T P TP L RY
Sbjct: 823 DITTPPTPNLLRY 835


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 96  GVAGPVRSSDSCWYTRPQSFFVRPCWL 16
           GV   +RS +  + T P   F  P  L
Sbjct: 599 GVNAAIRSQEPFYITEPHQIFSFPARL 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,155
Number of Sequences: 438
Number of extensions: 1743
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)