Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D03
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    54   5e-09
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    48   2e-07
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   0.95 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   2.9  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    25   2.9  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    24   3.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.0  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    24   5.0  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    23   6.7  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    23   8.8  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    23   8.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    23   8.8  

>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 53.6 bits (123), Expect = 5e-09
 Identities = 25/67 (37%), Positives = 38/67 (56%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           D  +    + +    +KY+ AG +V++   QV ++CVPGAS REI  +GD  LL E    
Sbjct: 4   DPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDN-LLHEYKSS 62

Query: 230 VQKGKRF 250
           + K +RF
Sbjct: 63  IYKSQRF 69


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 48.4 bits (110), Expect = 2e-07
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +2

Query: 41  EMADDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLE 214
           E   +  V+ +++    V KYK+AG++   V+++V+  C PGA   +IC  GD+LL E
Sbjct: 5   EATSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNE 62


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 20/62 (32%), Positives = 34/62 (54%)
 Frame = -1

Query: 231 TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLS 52
           TPS  SS+ S SP+S  S + +     + + S ++ +   +S    ++KSS+   S+S S
Sbjct: 153 TPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSS----SSKSSSSSSSSSKS 208

Query: 51  SA 46
           SA
Sbjct: 209 SA 210


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 3    EFGTRGTKYHNFKKWLTIKKLRKRLPK 83
            +F  RGT  H F+  L   +L+ R PK
Sbjct: 1322 DFLNRGTMQHMFESLLVPMRLKYRCPK 1348


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 68  KTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVP 163
           K I ++L V +   AG++++++ E    KC+P
Sbjct: 23  KQIRQELAVAQ---AGELISKINENCFDKCIP 51


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 186 HISLAEAPGTHLAMTCS 136
           H+SL E P  HL   CS
Sbjct: 368 HVSLGEVPDFHLLFHCS 384


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -1

Query: 231 TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLS 52
           T +  S + SLS ++  S+  +  +  A T S +  ++ P+S   + + SSA   S+S S
Sbjct: 4   TNNTSSVDTSLSSSASSSIPASSSSAAAST-SLSSSSVIPSSSSSMLSSSSATAISSSSS 62

Query: 51  SA 46
           S+
Sbjct: 63  SS 64


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +2

Query: 104 KLAGQI---VNRVLEQVIAKCVPG 166
           KL G+I   VN+ +EQ IA+ +PG
Sbjct: 275 KLRGEINKVVNKYIEQGIAELIPG 298


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -1

Query: 246 LFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVT 91
           LFP  + S +SS    S NSH      P T     C +     CP+SL L T
Sbjct: 247 LFPISSSSYLSSASETSGNSHKKF--KPLT--IRQCLKALPFYCPSSLILPT 294


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = -1

Query: 228 PSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSS 79
           P E+  N  ++   H+S  + PG  + M        +  A+L L+    S
Sbjct: 96  PCEIC-NSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES 144


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 204 SLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLSSAIS 40
           SL  N  + L      HL M  +   +T+   S + VT KSS ++F    +++ S
Sbjct: 786 SLMENRTVILV-THNVHLFMDSAAFIVTVKNGSAFPVTDKSSPLLFLAEQAASAS 839


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 213 SNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVT 91
           S++S   ++ I L    G H++    +T L+I    L LVT
Sbjct: 430 SDRSAISDTSIYLVSVIGKHVSKLSDKTPLSIVSELLNLVT 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,716
Number of Sequences: 5004
Number of extensions: 19979
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)