Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D03
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 46 4e-06
09_06_0184 - 21413275-21414267 29 0.46
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 27 1.8
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 27 1.8
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 27 1.8
09_04_0375 - 17055024-17055956,17056045-17056296 27 2.4
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 27 2.4
08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802 27 3.2
02_03_0409 + 18698349-18698691,18700802-18700983 26 4.2
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098... 26 5.6
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 26 5.6
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 25 7.4
08_02_0879 + 22183052-22183340,22183802-22183949,22184017-22184044 25 7.4
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785... 25 7.4
11_01_0765 + 6416980-6417390 25 9.8
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084 25 9.8
05_03_0017 - 7392742-7393110,7393212-7393319,7393522-7394079,739... 25 9.8
01_06_1384 + 36888265-36889577,36889683-36889908 25 9.8
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +2
Query: 41 EMADDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEE 217
E+ ++KE++ + ++ VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 6 EVREEKELDLSSSD--VVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
>09_06_0184 - 21413275-21414267
Length = 330
Score = 29.5 bits (63), Expect = 0.46
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 231 TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPA 109
+PS+ S +P SHI +AP + L+ +CS T ++ PA
Sbjct: 42 SPSDRWSPHIGTPGSHIGAVQAPASSLS-SCSETAVSFLPA 81
>10_08_0259 + 16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 92 VTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEET 220
VTK LA ++V+R Q +++ + + EFGD+ LLE++
Sbjct: 1238 VTKEGLAARVVDR---QQVSRTISKEEMLHLFEFGDEELLEQS 1277
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 213 SNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVFS 64
+++S S ++ ++ E L +CS + LT C +LV+T S + FS
Sbjct: 84 ASRSFSVDTTHTIKEENNLKLRNSCSFSYLTYCANCAFLVSTVSLQLKFS 133
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 27.5 bits (58), Expect = 1.8
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Frame = -1
Query: 225 SEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTI------CPASLYLVTTKSSAIVF- 67
S V K + P +SLA+ GT +A +T I C AS+Y+ +A+
Sbjct: 227 SFVEEGKCMDPGI-VSLADILGTRIADHVPQTPNKISEDMIKCIASIYIRIRDFNAVQHP 285
Query: 66 -------STSLSSAIS*NY--DIWSPSCR 7
S S +S +S Y DIWSP CR
Sbjct: 286 FFPSPCSSFSSASGLSSKYTGDIWSPRCR 314
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 228 PSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPAS 106
P S ++ SP H + A L + C LT+ P+S
Sbjct: 338 PCGAGSKRASSPEEHPPTSPATKPRLVLECDDLSLTVAPSS 378
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.1 bits (57), Expect = 2.4
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Frame = -1
Query: 213 SNKSLSPNSHISLAEAPGTHLAMTCSRT------RLTICPASLY-------LVTTK-SSA 76
S +P+ +SLA+ GT++A T + C A +Y LV + SS+
Sbjct: 147 SEGEAAPSGVVSLADYLGTNVADHIPETPNNLSEEMVRCMAGVYCKLADPPLVHHRASSS 206
Query: 75 IVFSTSLSSAIS*NY--DIWSPSCR 7
S S +S +S Y D+WSP+CR
Sbjct: 207 PASSFSSTSVVSPQYLGDMWSPNCR 231
>08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802
Length = 914
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 35 F*EMADDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCV 160
F E+ D + +ED ++Y+L G I NR L I +CV
Sbjct: 825 FKEILDVEPFMDPSSEDKFSSRYRLVGVIENRGLSIHIGQCV 866
>02_03_0409 + 18698349-18698691,18700802-18700983
Length = 174
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 219 VSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYL-VTTKSSA 76
+ S+K +P +S+A+A +++ CSR +++ P S Y TKS A
Sbjct: 119 ICSSKINNPRIDVSIAKAQHNNVSYGCSRI-ISVSPKSKYYHQLTKSRA 166
>05_03_0614 -
16206005-16206586,16207585-16207608,16209746-16209879,
16210703-16210832
Length = 289
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 249 NLFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICP 112
NL P ++ + LSP S +S + T + +CS T T P
Sbjct: 134 NLLP--NDDDLCPSTPLSPMSSVSCSSTASTLVTRSCSLTSTTFAP 177
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 158 VPGASAREICEFGDKLLLEETSEGVQKGK 244
+ G S E+ GD++ EE S+G + GK
Sbjct: 274 IDGMSYEELLALGDRIGTEEYSDGEEVGK 302
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 216 SSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLSSAIS 40
SS + P H A A + T T A+ TT SSA ++LSS +S
Sbjct: 101 SSRSLMGPGYHGDSAAAVSASSSFNSVMTAATSATATTTTTTTSSSATSPPSALSSPLS 159
>08_02_0879 + 22183052-22183340,22183802-22183949,22184017-22184044
Length = 154
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -1
Query: 204 SLSPNSHISLAEAPGT----HLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLSSA 46
S SP+S + A APGT A T +R+ + P SL + + + +S+S+ S+
Sbjct: 29 SFSPSSSSAAAAAPGTAPPDAPAATVTRSITIVRPPSLSVPSPRGGGGEYSSSVPSS 85
>04_03_0976 +
21376873-21377289,21377399-21377581,21378463-21378591,
21378869-21378999,21379111-21379270,21379783-21380067
Length = 434
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 192 NSHISLAEAPGTHLAMTCSRTRLTICPASLYL 97
N HISL ++P + A C+ + +LYL
Sbjct: 390 NVHISLYDSPASSAAFPCAAAGIVAGSLALYL 421
>11_01_0765 + 6416980-6417390
Length = 136
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 120 ICPASLYLVTTKSSAIVFSTSLSSAIS*NYDIWSPSCR 7
+C + L K S +VF+ + S+ IS +D SP C+
Sbjct: 98 LCLVNDGLQIVKGSPVVFTYAASAPISLAFDNASPRCQ 135
>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
Length = 380
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 156 HLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLSSA 46
++ +CS + L I S L + SSA+V S+ L+S+
Sbjct: 98 YIPQSCSGSSLQIYSQSSLLSLSPSSALVVSSQLNSS 134
>05_03_0017 -
7392742-7393110,7393212-7393319,7393522-7394079,
7394186-7394311,7394396-7394521,7394673-7395137,
7396822-7396901,7397394-7397664
Length = 700
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 268 NAMPFLESFSFLNTFRSFF**KFIPEFTYFS 176
++MPFL + S+ + +++ KF P F+YF+
Sbjct: 474 SSMPFLLAVSWASASITYWMVKFRPGFSYFA 504
>01_06_1384 + 36888265-36889577,36889683-36889908
Length = 512
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 131 VLEQVIAKCVPGASAREICEFGDKLLLEETSEGVQKGKRF*ERHSVFNMCVR 286
VL Q ++ PGA A E + + +EET + + KR + + VR
Sbjct: 321 VLPQDASQGTPGAGAEEAVPVSEAMAVEETEDELVIWKRIADEATRMQASVR 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,254,143
Number of Sequences: 37544
Number of extensions: 119036
Number of successful extensions: 295
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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