Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D03
         (288 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59435-1|AAB91536.1|  394|Homo sapiens cell cycle protein p38-2G...    69   4e-12
BC072007-1|AAH72007.1|  373|Homo sapiens PA2G4 protein protein.        69   4e-12
BC069786-1|AAH69786.1|  394|Homo sapiens proliferation-associate...    69   4e-12
BC032111-1|AAH32111.1|  373|Homo sapiens PA2G4 protein protein.        69   4e-12
BC007561-1|AAH07561.1|  394|Homo sapiens proliferation-associate...    69   4e-12
BC001951-1|AAH01951.1|  394|Homo sapiens proliferation-associate...    69   4e-12
AF104670-1|AAD05561.1|  394|Homo sapiens cell cycle protein prot...    69   4e-12
BC019222-1|AAH19222.1|  406|Homo sapiens Unknown (protein for IM...    55   5e-08
X86096-1|CAA60050.2|  413|Homo sapiens transcription factor prot...    27   8.3  
U15641-1|AAC50119.1|  413|Homo sapiens E2F-4 protein.                  27   8.3  
S75174-1|AAB32597.1|  416|Homo sapiens E2F-4 protein.                  27   8.3  
BC033180-1|AAH33180.1|  413|Homo sapiens E2F transcription facto...    27   8.3  
AF527540-1|AAM77918.1|  413|Homo sapiens E2F transcription facto...    27   8.3  
AF250378-1|AAF65226.1|  413|Homo sapiens E2F transcription facto...    27   8.3  

>U59435-1|AAB91536.1|  394|Homo sapiens cell cycle protein p38-2G4
           homolog protein.
          Length = 394

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           +D++ E+TIAEDLVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET + 
Sbjct: 4   EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63

Query: 230 VQKGK 244
            +K K
Sbjct: 64  FKKEK 68


>BC072007-1|AAH72007.1|  373|Homo sapiens PA2G4 protein protein.
          Length = 373

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           +D++ E+TIAEDLVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET + 
Sbjct: 4   EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63

Query: 230 VQKGK 244
            +K K
Sbjct: 64  FKKEK 68


>BC069786-1|AAH69786.1|  394|Homo sapiens proliferation-associated
           2G4, 38kDa protein.
          Length = 394

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           +D++ E+TIAEDLVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET + 
Sbjct: 4   EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63

Query: 230 VQKGK 244
            +K K
Sbjct: 64  FKKEK 68


>BC032111-1|AAH32111.1|  373|Homo sapiens PA2G4 protein protein.
          Length = 373

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           +D++ E+TIAEDLVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET + 
Sbjct: 4   EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63

Query: 230 VQKGK 244
            +K K
Sbjct: 64  FKKEK 68


>BC007561-1|AAH07561.1|  394|Homo sapiens proliferation-associated
           2G4, 38kDa protein.
          Length = 394

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           +D++ E+TIAEDLVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET + 
Sbjct: 4   EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63

Query: 230 VQKGK 244
            +K K
Sbjct: 64  FKKEK 68


>BC001951-1|AAH01951.1|  394|Homo sapiens proliferation-associated
           2G4, 38kDa protein.
          Length = 394

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           +D++ E+TIAEDLVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET + 
Sbjct: 4   EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63

Query: 230 VQKGK 244
            +K K
Sbjct: 64  FKKEK 68


>AF104670-1|AAD05561.1|  394|Homo sapiens cell cycle protein
           protein.
          Length = 394

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 50  DDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEG 229
           +D++ E+TIAEDLVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET + 
Sbjct: 4   EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63

Query: 230 VQKGK 244
            +K K
Sbjct: 64  FKKEK 68


>BC019222-1|AAH19222.1|  406|Homo sapiens Unknown (protein for
           IMAGE:4281661) protein.
          Length = 406

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 26/67 (38%), Positives = 39/67 (58%)
 Frame = +2

Query: 44  MADDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETS 223
           + +D+   +   E LVVTKYK+ G I NRVL  ++     G S   +CE GD +++EET 
Sbjct: 32  LLEDRGEGERKREGLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETG 91

Query: 224 EGVQKGK 244
           +  +K K
Sbjct: 92  KIFKKEK 98


>X86096-1|CAA60050.2|  413|Homo sapiens transcription factor
           protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 246 LFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVF 67
           L P   P          P + I+++  PGT    +   + L + P +L     +SSA++ 
Sbjct: 247 LTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLD 306

Query: 66  STSLSSAIS 40
           S+S SS+ S
Sbjct: 307 SSSSSSSSS 315


>U15641-1|AAC50119.1|  413|Homo sapiens E2F-4 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 246 LFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVF 67
           L P   P          P + I+++  PGT    +   + L + P +L     +SSA++ 
Sbjct: 247 LTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLD 306

Query: 66  STSLSSAIS 40
           S+S SS+ S
Sbjct: 307 SSSSSSSSS 315


>S75174-1|AAB32597.1|  416|Homo sapiens E2F-4 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 246 LFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVF 67
           L P   P          P + I+++  PGT    +   + L + P +L     +SSA++ 
Sbjct: 247 LTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLD 306

Query: 66  STSLSSAIS 40
           S+S SS+ S
Sbjct: 307 SSSSSSSSS 315


>BC033180-1|AAH33180.1|  413|Homo sapiens E2F transcription factor
           4, p107/p130-binding protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 246 LFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVF 67
           L P   P          P + I+++  PGT    +   + L + P +L     +SSA++ 
Sbjct: 247 LTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLD 306

Query: 66  STSLSSAIS 40
           S+S SS+ S
Sbjct: 307 SSSSSSSSS 315


>AF527540-1|AAM77918.1|  413|Homo sapiens E2F transcription factor
           4, p107/p130-binding protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 246 LFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVF 67
           L P   P          P + I+++  PGT    +   + L + P +L     +SSA++ 
Sbjct: 247 LTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLD 306

Query: 66  STSLSSAIS 40
           S+S SS+ S
Sbjct: 307 SSSSSSSSS 315


>AF250378-1|AAF65226.1|  413|Homo sapiens E2F transcription factor 4
           protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 246 LFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVF 67
           L P   P          P + I+++  PGT    +   + L + P +L     +SSA++ 
Sbjct: 247 LTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLD 306

Query: 66  STSLSSAIS 40
           S+S SS+ S
Sbjct: 307 SSSSSSSSS 315


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,115,113
Number of Sequences: 237096
Number of extensions: 690939
Number of successful extensions: 1219
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 76,859,062
effective HSP length: 72
effective length of database: 59,788,150
effective search space used: 1375127450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)