Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D03
(288 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 64 2e-11
AF068716-3|ABQ13069.1| 208|Caenorhabditis elegans Hypothetical ... 33 0.025
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 3.8
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 25 6.6
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 25 6.6
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 25 6.6
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 25 6.6
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 25 6.6
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +2
Query: 71 TIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLLLEETSEGVQKGKRF 250
T+A D VVTKY++A +I N VL++V+A GA A ++C+ GDKL+LE+T + +K K F
Sbjct: 22 TLANDAVVTKYQVAAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNF 81
>AF068716-3|ABQ13069.1| 208|Caenorhabditis elegans Hypothetical
protein F26D11.13 protein.
Length = 208
Score = 33.5 bits (73), Expect = 0.025
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +2
Query: 41 EMADDKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGASAREICEFGDKLL---- 208
E + E++K + + ++ KYK QI+ E+ A+ + + E G K++
Sbjct: 13 EKEETIEIQKNLVLNNMILKYKTDDQIILHSSEKDRAQRQCLLDVKSLTENGMKVINSIG 72
Query: 209 -LEETSEGVQKGKRF*ERHSVFNMC 280
L + + G++KG+R E++ FNMC
Sbjct: 73 KLRDAASGIRKGRRAPEKN--FNMC 95
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 26.2 bits (55), Expect = 3.8
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = -1
Query: 282 THMLKTLCLS*NLFPF*TPSEVSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASL 103
T + TL LS + P TP VSS+ S S ++ ++ P T T + + T S
Sbjct: 446 TPKVSTLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPT---PST 502
Query: 102 YLVTTKSSAIVFSTSLSSAIS 40
TT S + S S + A S
Sbjct: 503 SNPTTPKSTVTASPSTTGATS 523
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -1
Query: 219 VSSNKSLSPNSHISLAEAPGTHLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLSSAIS 40
+SSN + P + ++ PG CS L CP +SS + S ++ + I+
Sbjct: 958 ISSNNNQCPTGYTCQSDVPGAFQGYCCSGNHL--CPNKAEFYLEESSQMPRSCTVGAFIT 1015
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 47 ADDKEVEKTIAEDLVVTKYKLAGQIVNR 130
AD++E E+ E +V K K+AG+ V R
Sbjct: 1396 ADEEEEEEEYEESPIVKKPKIAGRPVGR 1423
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 47 ADDKEVEKTIAEDLVVTKYKLAGQIVNR 130
AD++E E+ E +V K K+AG+ V R
Sbjct: 1396 ADEEEEEEEYEESPIVKKPKIAGRPVGR 1423
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 47 ADDKEVEKTIAEDLVVTKYKLAGQIVNR 130
AD++E E+ E +V K K+AG+ V R
Sbjct: 1396 ADEEEEEEEYEESPIVKKPKIAGRPVGR 1423
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 53 DKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPG 166
D ++ K L VT+ AG++VN V+EQ IAK G
Sbjct: 886 DCQIPKGTKIALSVTQSTEAGEVVNFVIEQ-IAKSAAG 922
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical protein
R07E4.1a protein.
Length = 1122
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 53 DKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPG 166
D ++ K L VT+ AG++VN V+EQ IAK G
Sbjct: 1022 DCQIPKGTKIALSVTQSTEAGEVVNFVIEQ-IAKSAAG 1058
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 47 ADDKEVEKTIAEDLVVTKYKLAGQIVNR 130
AD++E E+ E +V K K+AG+ V R
Sbjct: 1396 ADEEEEEEEYEESPIVKKPKIAGRPVGR 1423
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 47 ADDKEVEKTIAEDLVVTKYKLAGQIVNR 130
AD++E E+ E +V K K+AG+ V R
Sbjct: 1396 ADEEEEEEEYEESPIVKKPKIAGRPVGR 1423
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,412,559
Number of Sequences: 27780
Number of extensions: 110260
Number of successful extensions: 327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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