Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D03
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   0.75 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   9.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   9.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   9.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 65  EKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPGA 169
           EK +AE LV   +K A +++NR +  V     PGA
Sbjct: 684 EKILAEPLVKEHFKKALELMNRAV-SVPQSHQPGA 717


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -1

Query: 159 THLAMTCSRTRLTICPASLYLVTTKSSAIVFSTSLSSAIS*NYDIW 22
           T  ++ C  TR    P +L ++ T + ++VF   +      + ++W
Sbjct: 453 TRDSVWCWDTRKEYIPQNLGVIGTSNLSLVFPNDIKVDHEYDQNVW 498


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +3

Query: 3   EFGTRGTKYHNFKKWLTIKKLRKRLPKTW 89
           E    GTKYH     + +++   + P  W
Sbjct: 197 ELSRVGTKYHRSGGLMNVERFPYQPPFAW 225


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 86  LVVTKYKLAGQIVNRVLEQVIAKCVPGASAR 178
           L V   KLA      V+EQV  K  P A  R
Sbjct: 92  LAVKDNKLASNAGYNVIEQVRTKEEPHAPYR 122


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 86  LVVTKYKLAGQIVNRVLEQVIAKCVPGASAR 178
           L V   KLA      V+EQV  K  P A  R
Sbjct: 92  LAVKDNKLASNAGYNVIEQVRTKEEPHAPYR 122


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 86  LVVTKYKLAGQIVNRVLEQVIAKCVPGASAR 178
           L V   KLA      V+EQV  K  P A  R
Sbjct: 92  LAVKDNKLASNAGYNVIEQVRTKEEPHAPYR 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,941
Number of Sequences: 438
Number of extensions: 1445
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)