Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D02
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    29   0.58 
10_02_0117 + 5471920-5472401,5472602-5472668,5472956-5473012,547...    27   4.1  
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585...    27   4.1  
12_02_0456 - 19222153-19222311,19223005-19223379,19223926-192240...    25   9.4  
11_02_0141 + 8744928-8746187                                           25   9.4  
02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333     25   9.4  

>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 34  SVQVLHPVDSHNLHITASPFCLRSGLPAL-YIPTCGRH 144
           S+ V++PV   +LH+ + P   R+G  +  Y PT G++
Sbjct: 153 SIVVINPVTGESLHVPSLPTATRAGTISFGYHPTTGKY 190


>10_02_0117 +
           5471920-5472401,5472602-5472668,5472956-5473012,
           5473301-5473538,5476504-5476611,5476868-5477111,
           5478307-5478550,5478636-5478842
          Length = 548

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 192 FTYVSFSIFSCFALSCFALNIFSV 263
           F Y +   FSC  L CFA ++ SV
Sbjct: 5   FVYHALGSFSCVCLLCFASSLVSV 28


>01_06_0958 -
           33357689-33357997,33358135-33358284,33358371-33358511,
           33359807-33360592
          Length = 461

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 79  LCEGCGNPLDAVLELNFSVQFS*CLV 2
           LC GCG    AV++ + ++ F  CL+
Sbjct: 125 LCTGCGRRAAAVIDYDIALLFQPCLL 150


>12_02_0456 -
           19222153-19222311,19223005-19223379,19223926-19224047,
           19224119-19224162,19224296-19224354,19224431-19224498,
           19224707-19224851,19225243-19225440
          Length = 389

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 201 VSFSIFSCFALSCFALNIFSVIYYNYQKQLNI 296
           V ++ F  F+L+CFA+ I   I++ Y   + +
Sbjct: 258 VVYTAFFYFSLACFAIGIALNIWFLYHPMVGV 289


>11_02_0141 + 8744928-8746187
          Length = 419

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 94  RMATRLCEGCGNPLDAVLELN 32
           R+   L  GCGN L  VLE+N
Sbjct: 337 RVDVGLSRGCGNGLPEVLEIN 357


>02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333
          Length = 494

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 147 EMATTRWNIQCG*ATPKAE-WRRGYVKVVGIHW 52
           EM  T W+  CG  T K E   +GY +   + W
Sbjct: 363 EMRVTVWDHWCGMQTDKVEREEQGYSEKANVEW 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,487,999
Number of Sequences: 37544
Number of extensions: 118513
Number of successful extensions: 284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)