Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D01
(301 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q02543 Cluster: 60S ribosomal protein L18a; n=120; Fung... 108 3e-23
UniRef50_Q0IFJ6 Cluster: Putative uncharacterized protein; n=5; ... 73 1e-12
UniRef50_Q54MK8 Cluster: Ribosomal protein L18a; n=2; Eukaryota|... 69 3e-11
UniRef50_Q4N436 Cluster: 60S ribosomal protein L18, putative; n=... 64 6e-10
UniRef50_Q4PBN4 Cluster: Putative uncharacterized protein; n=1; ... 62 2e-09
UniRef50_P51418 Cluster: 60S ribosomal protein L18a-2; n=24; Vir... 58 3e-08
UniRef50_Q5CNE7 Cluster: 60S ribosomal protein L18a; n=2; Crypto... 56 1e-07
UniRef50_P05732 Cluster: 60S ribosomal protein L20; n=6; Dikarya... 54 5e-07
UniRef50_Q015Y8 Cluster: Putative ribosomal protein L18a; n=1; O... 52 3e-06
UniRef50_Q4Q5J4 Cluster: 60S ribosomal protein L18a, putative; n... 50 1e-05
UniRef50_Q98S89 Cluster: 60S ribosomal protein L18A; n=1; Guilla... 40 0.008
UniRef50_Q7QNQ0 Cluster: GLP_7_3170_2649; n=1; Giardia lamblia A... 38 0.058
UniRef50_Q4KGP2 Cluster: Outer membrane usher protein; n=1; Pseu... 31 6.7
>UniRef50_Q02543 Cluster: 60S ribosomal protein L18a; n=120;
Fungi/Metazoa group|Rep: 60S ribosomal protein L18a -
Homo sapiens (Human)
Length = 176
Score = 108 bits (259), Expect = 3e-23
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + +
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 164
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 165 PRFTTKRPNTFF 176
>UniRef50_Q0IFJ6 Cluster: Putative uncharacterized protein; n=5;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 153
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +2
Query: 2 HEAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYK 181
H+ + CY +RHRARAHSI+IIKVE +K + RR +KQF+ SKI F L +R H +
Sbjct: 81 HKVLLFCYSGTPSRHRARAHSIKIIKVESVKTSKTRRVHIKQFYDSKIRFLLVQRYHHKR 140
Query: 182 RLNTFAYKRPSTY 220
F++ +P TY
Sbjct: 141 YRKLFSFCQPDTY 153
>UniRef50_Q54MK8 Cluster: Ribosomal protein L18a; n=2;
Eukaryota|Rep: Ribosomal protein L18a - Dictyostelium
discoideum AX4
Length = 191
Score = 68.5 bits (160), Expect = 3e-11
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AV+Q Y +M +RH AR SI II ++ I A+ RR KQFH SKI FPL R+ + K
Sbjct: 121 AVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHRIAKSK-- 178
Query: 188 NTFAYKRPSTYF 223
+TF RP+T+F
Sbjct: 179 STFVANRPNTFF 190
>UniRef50_Q4N436 Cluster: 60S ribosomal protein L18, putative; n=9;
Aconoidasida|Rep: 60S ribosomal protein L18, putative -
Theileria parva
Length = 191
Score = 64.1 bits (149), Expect = 6e-10
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AV+Q Y DM RHRARA IQII+V I + C++P+V Q H K+ FP+ K + +R
Sbjct: 118 AVSQMYGDMAGRHRARASCIQIIRVAEISDSDCKKPKVTQMHGKKLKFPILKPMPHVERK 177
Query: 188 N--TFAYKRPS 214
+ F+ KRPS
Sbjct: 178 DRKLFSTKRPS 188
>UniRef50_Q4PBN4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 532
Score = 62.5 bits (145), Expect = 2e-09
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 5 EAVTQCYRDMGARHRARAHSIQIIKV-EVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYK 181
EA Y+DM ARHRAR SI I+K+ E+ K+ +RP +KQ + FPLP R + +
Sbjct: 461 EAAESLYQDMAARHRARFASIHILKIAEIEKSEDVKRPYIKQLMAPGLKFPLPHR--RPR 518
Query: 182 RLNTFAYKRPSTYF 223
+ TFA +RP+T++
Sbjct: 519 HVGTFAGQRPNTFY 532
>UniRef50_P51418 Cluster: 60S ribosomal protein L18a-2; n=24;
Viridiplantae|Rep: 60S ribosomal protein L18a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 178
Score = 58.4 bits (135), Expect = 3e-08
Identities = 27/50 (54%), Positives = 31/50 (62%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 157
AV Q Y +M +RHR R IQIIK + A C+R KQFH SKI FPL
Sbjct: 104 AVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153
>UniRef50_Q5CNE7 Cluster: 60S ribosomal protein L18a; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L18a -
Cryptosporidium hominis
Length = 185
Score = 56.4 bits (130), Expect = 1e-07
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AV+Q Y ++ HRA+ SIQII+V I A +RP+ QF SK+ FP +++ +
Sbjct: 111 AVSQMYEELAGSHRAQRSSIQIIRVSQIDAKLAKRPKTTQFFNSKLKFPAIRKLPMAPKA 170
Query: 188 --NTFAYKRPSTY 220
+TF RP+T+
Sbjct: 171 LRSTFTASRPTTF 183
>UniRef50_P05732 Cluster: 60S ribosomal protein L20; n=6;
Dikarya|Rep: 60S ribosomal protein L20 -
Schizosaccharomyces pombe (Fission yeast)
Length = 176
Score = 54.4 bits (125), Expect = 5e-07
Identities = 36/76 (47%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQ 175
AV Y DM ARHRAR SI+I+K VEV K RR VKQ + FPLP R V
Sbjct: 101 AVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVG 160
Query: 176 YKRLNTFAYKRPSTYF 223
FA RPST++
Sbjct: 161 LAGKKVFAPHRPSTFY 176
>UniRef50_Q015Y8 Cluster: Putative ribosomal protein L18a; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein L18a
- Ostreococcus tauri
Length = 254
Score = 52.0 bits (119), Expect = 3e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 2 HEAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRV--HQ 175
++AV Y +M +RHR R+ +QIIK+ + RR +QF + FP+ +V H
Sbjct: 177 NKAVDALYEEMASRHRVRSSQLQIIKIAEVSDENVRRENTRQFLAEDLSFPVVNKVMRHP 236
Query: 176 YKRLNT-FAYKRPS 214
K T F YKRP+
Sbjct: 237 SKATKTIFKYKRPN 250
>UniRef50_Q4Q5J4 Cluster: 60S ribosomal protein L18a, putative; n=8;
Trypanosomatidae|Rep: 60S ribosomal protein L18a,
putative - Leishmania major
Length = 179
Score = 50.0 bits (114), Expect = 1e-05
Identities = 22/70 (31%), Positives = 40/70 (57%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AV+Q Y D+ +RHRAR H+I+++ V+ I + + Q+H + FPL +R + R
Sbjct: 104 AVSQAYHDLASRHRARYHNIEVLNVKSIPDHEVKHLSIAQYHAPNLSFPLLQRRTKATRK 163
Query: 188 NTFAYKRPST 217
+ + + +T
Sbjct: 164 DRAIFVKKNT 173
>UniRef50_Q98S89 Cluster: 60S ribosomal protein L18A; n=1;
Guillardia theta|Rep: 60S ribosomal protein L18A -
Guillardia theta (Cryptomonas phi)
Length = 159
Score = 40.3 bits (90), Expect = 0.008
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKR 184
AV Q Y ++G R + + + I++VE IK + VKQF KI +P+ + Q R
Sbjct: 99 AVEQFYIELGGRFKIKPKDVTILRVERIKEIESSKSNVKQFLGKKINYPITQHFVQKSR 157
>UniRef50_Q7QNQ0 Cluster: GLP_7_3170_2649; n=1; Giardia lamblia ATCC
50803|Rep: GLP_7_3170_2649 - Giardia lamblia ATCC 50803
Length = 173
Score = 37.5 bits (83), Expect = 0.058
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLP 160
A+ + Y +M + RAR H IQII V+ + RR +V F + FP P
Sbjct: 99 AMDKVYSEMAGQCRARYHDIQIINVKEVADEDVRREKVAMFTQKGVRFPHP 149
>UniRef50_Q4KGP2 Cluster: Outer membrane usher protein; n=1;
Pseudomonas fluorescens Pf-5|Rep: Outer membrane usher
protein - Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477)
Length = 896
Score = 30.7 bits (66), Expect = 6.7
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 18 SAIEIWELDTELVHIQYR-SSKWK*SRQRHVVDHRLSNSTPARSVSRYQNAFTNTSVSIP 194
S+++ W + ++ S++W+ + + ++S+ +R+ + N F + S+SIP
Sbjct: 556 SSLQYWNRQGQTLNFAMGYSNQWRGNSYSFMAQRMRASSSGSRAGAGADNTFFSFSLSIP 615
Query: 195 LHTRGRARTLCN 230
L GR T N
Sbjct: 616 LGREGRRGTTIN 627
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,800,202
Number of Sequences: 1657284
Number of extensions: 5500199
Number of successful extensions: 13235
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13230
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -