Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D01
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    54   3e-09
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    54   3e-09
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   1.0  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   2.4  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    24   5.5  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    24   5.5  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    24   5.5  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    23   7.3  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    23   9.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    23   9.6  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    23   9.6  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   9.6  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    23   9.6  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 36/76 (47%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
 Frame = +2

Query: 8   AVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQ 175
           AV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ     + FPLP R   V  
Sbjct: 101 AVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVG 160

Query: 176 YKRLNTFAYKRPSTYF 223
                 FA  RPST++
Sbjct: 161 LAGKKVFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 36/76 (47%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
 Frame = +2

Query: 8   AVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQ 175
           AV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ     + FPLP R   V  
Sbjct: 101 AVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVG 160

Query: 176 YKRLNTFAYKRPSTYF 223
                 FA  RPST++
Sbjct: 161 LAGKKVFAPHRPSTFY 176


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 280 FFFCYEMAFIV--IIPYIKLHKVRARPLVCKG 191
           F F Y   FI   I+P I++  + A+PL C G
Sbjct: 370 FLFAYPAIFIFMWILPQIQIIVILAQPLHCSG 401


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 126 NSTPARSVSRYQNAFTNTSVSIPLHTRGRAR 218
           NS+P +S+S+Y NA  N   SI   T    +
Sbjct: 148 NSSPFKSLSQYWNAAYNKKESISSSTNSNIK 178


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 80  VEVIKAAACRRPQVKQFHTSKIG 148
           VE+  AA C++ +    HT ++G
Sbjct: 315 VEIWDAATCKKTRTMSGHTERVG 337


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 104 CRRPQVKQFHTSKIGFPLPKRVHQYK 181
           C    VK      I FP+P + H+YK
Sbjct: 262 CYVKPVKNLRRLDIVFPIPGQYHKYK 287


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 11  VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRR 112
           VT+   D+G   + + H ++  K+ + +A ACR+
Sbjct: 90  VTRSLHDVGDFEQCKRHLVENGKLFIQRARACRQ 123


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 244 IPYIK-LH--KVRARPLVCKGIETLVLVNAFW*RETDL 140
           +P IK LH    R  PL+    + +VLV   W +E DL
Sbjct: 213 LPDIKNLHYWTTRLSPLINSNTDAIVLVANRWGKENDL 250


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 101 ACRRPQVKQFHTSKIGFPLPKRVHQYKRLNT 193
           ACR+   ++F  S  G    K+  Q+K++ T
Sbjct: 100 ACRKLSTERFFYSPNGIDEMKKQQQFKKIPT 130


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 161 KRVHQYKRLNTFAYKRPS 214
           K+  +Y  L+TF+YKR S
Sbjct: 831 KKAAEYSLLHTFSYKRLS 848


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 108 VDHRLSNSTPARSVSRYQNAFTNTSVSIPLHTRGRARTLC---NFMYGMITIKAIS*QKK 278
           +D  L+N+  A  +++        S   P +T     T     +F YG ++ K +S  KK
Sbjct: 322 IDLVLNNAEKASLIAKELAVLKEKSSFFPTNTGNTFETKPVKQDFFYGKVSDKGVSSSKK 381

Query: 279 K 281
           K
Sbjct: 382 K 382


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 289 FFLFFFCYEMAFIVIIPYIKLH--KVRARPLVCKGIETLVLVNAFW*RE 149
           FF + F   + ++  I ++ L    +   PL+   +     VN FW R+
Sbjct: 200 FFSYLFINALYYLFAIIFVPLGIWDIAEYPLMMGNVSKTTSVNDFWSRD 248


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -1

Query: 154 RETDLA-GVELLNLWSTTCRCLDYFHFDD 71
           RE D A  +    LW T C CL ++   D
Sbjct: 352 REGDSAKNIPTHKLWCTYCLCLAHYKLGD 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,621
Number of Sequences: 5004
Number of extensions: 23165
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)