Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D01
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 56 7e-09
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 55 1e-08
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 54 2e-08
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 28 1.2
11_06_0007 - 19171122-19172036 28 1.6
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301... 28 1.6
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 1.6
11_01_0445 - 3455449-3456096,3456348-3457958 27 2.7
11_06_0010 + 19235419-19236450 26 4.7
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 26 4.7
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 26 6.3
09_02_0462 + 9583558-9584910 26 6.3
12_02_0943 - 24662147-24662195,24662440-24662834,24662979-246630... 25 8.3
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 25 8.3
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 25 8.3
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353... 25 8.3
02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86... 25 8.3
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 55.6 bits (128), Expect = 7e-09
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQY 178
AV Q Y +M +RHR R IQIIK + C+R KQFH S I FPL R
Sbjct: 104 AVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTR 163
Query: 179 KRLNTFAYKRPSTY 220
K TF RP+ +
Sbjct: 164 KLKTTFKASRPNLF 177
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQY 178
AV Q Y +M +RHR R IQIIK + C+R KQFH S I FPL R
Sbjct: 104 AVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTR 163
Query: 179 KRLNTFAYKRPSTY 220
K TF RP+ +
Sbjct: 164 KLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQY 178
AV Q Y +M +RHR R IQIIK + C+R KQFH I FPL R
Sbjct: 121 AVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTR 180
Query: 179 KRLNTFAYKRPSTY 220
K TF RP+ +
Sbjct: 181 KLKTTFKASRPNLF 194
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 156 YQNAFTNTSVSIPLHTRGRARTLCNFMYGMITIKAIS*QKKKR 284
Y ++ TN + + R + + NFM G ++KA S K+KR
Sbjct: 146 YWDSQTNAIPDVQVEVRSKLHEINNFMKGKDSMKAKSGSKRKR 188
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -2
Query: 132 WNCLTCGRRHAAALITST--LMICIECARALCLAPISL 25
W C CG R AA L+ L +C C P+ L
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>08_01_0341 +
3011238-3011246,3011824-3012192,3012412-3012505,
3012594-3012631,3012862-3013008,3013912-3014011,
3014615-3015042,3015234-3015389
Length = 446
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 295 LEFFLFFFCYEMAFIVIIP---YIKLHKVRARPL 203
L F FF Y+ + +++P Y+K+ V+ RP+
Sbjct: 371 LRLFCFFIAYQFCWHLLLPYVEYVKVKHVKVRPI 404
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 174 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 46
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
>11_01_0445 - 3455449-3456096,3456348-3457958
Length = 752
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 119 VKQFHTSKIGFPLPKRVHQYKRLNTFAYK 205
V+ F SKIG P R+ QY L YK
Sbjct: 447 VRSFFESKIGEPWHGRIDQYDFLQQITYK 475
>11_06_0010 + 19235419-19236450
Length = 343
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 147 PILLVWNCLTCGRRHAAALITST--LMICIECARALCLAPISL 25
P W+C +CG A L+ L +C C L P+ L
Sbjct: 289 PAASKWSCKSCGEGDATVLLLPCRHLCLCKACEPKLDACPVCL 331
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 235 IKLHKVRARPLVCKGIETLVLVNAFW 158
+++ V +PLVCKG E V+ + W
Sbjct: 254 LEIADVEGKPLVCKGCEVEVIGSTPW 279
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 159 GSGKPILLVWNCLTCGRRHAAALITSTLMICIECARALCLAPISL 25
G G+P W RH L+T++L + + C AL + S+
Sbjct: 26 GRGRPEEEGWPPSLAENRHLIVLLTTSLAVLVGCGVALLVRRSSI 70
>09_02_0462 + 9583558-9584910
Length = 450
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 126 CLTCGRRHAAALITSTLMICIECA 55
C CG LI+ T MI ++CA
Sbjct: 101 CYGCGNPETEVLISKTQMITLKCA 124
>12_02_0943 -
24662147-24662195,24662440-24662834,24662979-24663057,
24663129-24663250,24663363-24663449,24663543-24663891,
24664227-24664540
Length = 464
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 126 CLTCGRRHAAALITSTLMICIECARALCLAPISL 25
C CG AA + L +C EC RA L L
Sbjct: 47 CGKCGGGAAAVAVAGGLGLCGECFRANLLGKFKL 80
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 104 CRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRPSTYFM*FYVWND 247
C+RP K+ S++ FP+ QY++ F P Y+ +V N+
Sbjct: 441 CKRPYFKERVCSQLNFPMQISCLQYEKQGKF----PKDYWWCHFVNNN 484
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 140 KIGFPLPKRVHQYKRLNTFAYKRPST 217
K+G L K +HQ +LN A+ +P T
Sbjct: 1173 KMGMQLHKCIHQLPKLNLSAHVQPIT 1198
>02_02_0592 -
11934238-11934249,11934755-11934835,11935166-11935324,
11936362-11936442,11936523-11936591,11937147-11937260,
11937805-11937858,11938788-11938915,11940527-11940782
Length = 317
Score = 25.4 bits (53), Expect = 8.3
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 GARHRARAHSIQIIKVE-VIKAAACRRPQVKQ-FHTSKIGFPLPKRVHQYKRLNTFAYKR 208
GA R + S ++ K+E VI + Q++Q F +K+ + +VHQ RL+ AYK
Sbjct: 170 GAEKRVESLSSEVKKMEGVIAEQWIQIRQLEQAFVLTKM---MTSKVHQRSRLSETAYKW 226
Query: 209 P 211
P
Sbjct: 227 P 227
>02_01_0116 +
862401-862734,862823-863078,863177-863311,863395-864721
Length = 683
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 286 FLFFFCYEMAFIVIIPYIKLHKVRARPLVCKGIETLVLVNAF 161
FLF + FI I+P+ K+ +R R G T L+N+F
Sbjct: 147 FLFLISFAGMFI-IMPFRKVMIIRHRLTFPSGTATAHLINSF 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,364,336
Number of Sequences: 37544
Number of extensions: 159921
Number of successful extensions: 372
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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