Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D01
(301 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 108 4e-24
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 108 4e-24
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 108 4e-24
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 108 4e-24
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 108 4e-24
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 108 4e-24
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 106 1e-23
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 95 5e-20
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 57 1e-08
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 108 bits (259), Expect = 4e-24
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + +
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 164
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 165 PRFTTKRPNTFF 176
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 108 bits (259), Expect = 4e-24
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + +
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 164
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 165 PRFTTKRPNTFF 176
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 108 bits (259), Expect = 4e-24
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + +
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 164
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 165 PRFTTKRPNTFF 176
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 108 bits (259), Expect = 4e-24
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + +
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 164
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 165 PRFTTKRPNTFF 176
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 108 bits (259), Expect = 4e-24
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + +
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 164
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 165 PRFTTKRPNTFF 176
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 108 bits (259), Expect = 4e-24
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + +
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 164
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 165 PRFTTKRPNTFF 176
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 106 bits (255), Expect = 1e-23
Identities = 50/72 (69%), Positives = 56/72 (77%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
AVTQCYRDMGARHRARAHSIQI+KVE I + CRRP VKQFH SKI FPLP RV + +
Sbjct: 69 AVTQCYRDMGARHRARAHSIQIMKVEEIAVSKCRRPAVKQFHDSKIKFPLPHRVLRRQHK 128
Query: 188 NTFAYKRPSTYF 223
F KRP+T+F
Sbjct: 129 PRFTTKRPNTFF 140
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 94.7 bits (225), Expect = 5e-20
Identities = 45/66 (68%), Positives = 51/66 (77%)
Frame = +2
Query: 26 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYK 205
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH SKI FPLP RV + + F K
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60
Query: 206 RPSTYF 223
RP+T+F
Sbjct: 61 RPNTFF 66
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 8 AVTQCYRDMGARHRARAHSIQIIKVEVIKAA 100
AVTQCYRDMGARHRARAHSIQI+ VE I A+
Sbjct: 105 AVTQCYRDMGARHRARAHSIQIMMVEEIAAS 135
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,030,871
Number of Sequences: 237096
Number of extensions: 896242
Number of successful extensions: 1952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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