Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D01
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...    87   2e-18
Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical pr...    29   0.82 
Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    28   1.4  
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    23   4.0  
AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    25   7.6  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 40/72 (55%), Positives = 51/72 (70%)
 Frame = +2

Query: 8   AVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRL 187
           AVTQCYRDMGARHRA+A  I I+KV+ +KA   +R  +K FH +KI FPLP RV + K L
Sbjct: 108 AVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNL 167

Query: 188 NTFAYKRPSTYF 223
           + F   R +T+F
Sbjct: 168 SVFTTARQNTHF 179


>Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical
           protein E03H4.7 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 301 TPLEFFLFFFCYEMAFIVIIPYIKLHKVRARPLVCKGIETLVLVN 167
           TP   + +F    +  +   P +KLH +  RPLV  G  + +L++
Sbjct: 239 TPCNMYSYFLLLGLFTVAAFP-LKLHPLIVRPLVTVGTGSFILIS 282


>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 11  VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 157
           VT  +++ GAR+     + Q  K  VI A+A        +H  ++G P+
Sbjct: 143 VTGSFKERGARYALSKMAEQFKKAGVIAASAGNHALALSYHGQQMGIPV 191


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 23.0 bits (47), Expect(2) = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 KPILLVWNCLTCGRRHAAALITSTLMICIECA 55
           +P  +++N   C   + A +    LMIC  CA
Sbjct: 95  QPCKIMFNEYECYPFYTANIFIRLLMICTNCA 126



 Score = 21.8 bits (44), Expect(2) = 4.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 261 WLLLLSFHT*NYIKYVLGLLYAKVLRRLYW*TRFGSGKPILLV 133
           +L   + +T N I  +   L   VLR+LY  + F +   +LLV
Sbjct: 23  FLFQSNVYTNNIIAIITWTLTVVVLRKLYTKSIFPNSTLVLLV 65


>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 135 VWNCLTCGRRHAAALITSTLMICIECARALCLA 37
           +W C TC +++++  ++ T  +   C    C A
Sbjct: 143 LWKCQTCRKKYSSQDVSRTPRVYSTCGHTSCEA 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,159,750
Number of Sequences: 27780
Number of extensions: 136441
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)