Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C23
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   0.64 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   0.85 
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    27   1.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   2.6  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   3.4  
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    25   4.5  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   4.5  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   4.5  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 170 SRGSSTCLLSGTNYTPYIHTLRNNKTLNLF 81
           +RG+   ++ G+NYT  + T  NN  +NL+
Sbjct: 604 NRGNGAGIVLGSNYTLLLFTEDNNALMNLY 633


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 62  YVLKIRQ-TSSMFYYYVMYECRVCNLFLIV 148
           +V K+ + T+S+F  Y ++ C VCN F ++
Sbjct: 491 HVAKVNEKTNSIFRTYEVHGCEVCNSFCLL 520


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 17  SLTYYIFTKNTWNIEYVLKIR 79
           +L YY + K+TW I Y+ KIR
Sbjct: 217 ALVYYAYRKDTWKI-YMAKIR 236


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/50 (18%), Positives = 21/50 (42%)
 Frame = +2

Query: 2   HEETFSLTYYIFTKNTWNIEYVLKIRQTSSMFYYYVMYECRVCNLFLIVN 151
           + E +   YYI +  +W   Y +++ Q       + ++  R+   +   N
Sbjct: 271 YHEAYEYYYYIRSSFSWEDSYTIEVVQILLSVALFALFSSRLSQAYTFTN 320


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 11  TFSLTYYIFTKNTWNIEYVLKIRQTSSMFYYYVMYECRVCNLF 139
           +FS+ +    + +W+IE  LK+    S FY   +   R+  L+
Sbjct: 516 SFSVLWDFIYETSWHIERWLKVFSVQSEFYILKLIIQRLYQLY 558


>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 SKQVLDPRDYHRNYFIKVHLKFTVPLEVRRR*Y 243
           SK + DP D+H+N +     K    +  RR  Y
Sbjct: 97  SKDMWDPTDFHKNVYASALSKSQDEMIARRENY 129


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 169 LGDPALVYYQEQITHPTFIHYV 104
           L +PA      Q THPTF++Y+
Sbjct: 98  LSEPAPHGLAGQPTHPTFLYYI 119


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 169 DYHRNYFIKVHLKFTVPLEVRRR*YLHPFKLFIQTCK 279
           D+ R+  IK++ ++  PLE   + +L P     Q C+
Sbjct: 411 DFERDMMIKINDRYEFPLEFDAKAFLSPEADQSQNCE 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,484
Number of Sequences: 5004
Number of extensions: 32178
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)