Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C23
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173...    27   4.1  
03_02_0930 - 12480983-12481888                                         27   5.5  
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    26   7.2  
01_06_1179 - 35161229-35162368                                         26   7.2  

>02_05_0939 +
           32914936-32915055,32916674-32916823,32917160-32917305,
           32917396-32917552,32917695-32917753,32918180-32918291,
           32918901-32919050,32919180-32919316,32919977-32920123,
           32920197-32920298,32920674-32920731,32920840-32920941,
           32921905-32921942,32922031-32922157,32922228-32922401,
           32922542-32922628,32923838-32923947,32924654-32924714,
           32925338-32925515,32925628-32925833,32926108-32926227,
           32927202-32927423,32927708-32927847,32927976-32928087,
           32928254-32928304,32928384-32928473,32928630-32928800,
           32928897-32929049,32929860-32930036,32930131-32930268,
           32930363-32930433,32930837-32930936,32931156-32931212,
           32931301-32931357,32931451-32931531,32931614-32931696,
           32931831-32931966
          Length = 1459

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/34 (29%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 248 THLNFLYKLV-NYTNHVKFVKTRYNKMNLLLSYY 346
           TH  F  K+  N+++H +  KT++++ + ++S+Y
Sbjct: 499 THETFATKMFRNFSSHHRLEKTKFSETDFVISHY 532


>03_02_0930 - 12480983-12481888
          Length = 301

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 317 CTGF*RTSHDLYNLQVCIKSLNGCRYHR 234
           CT   R   DL +L  C  SLN   +HR
Sbjct: 249 CTNGVRRLEDLQDLLACYLSLNAAEHHR 276


>10_06_0002 +
           9382559-9382937,9383008-9383180,9386752-9386901,
           9387180-9387325,9387416-9387572,9387720-9387778,
           9388204-9388360,9389001-9389150,9389280-9389416,
           9390071-9390217,9390292-9390393,9390742-9390799,
           9391997-9392034,9392124-9392250,9392320-9392493,
           9393125-9393256,9393940-9394049,9394752-9394812,
           9395036-9395213,9395326-9395531,9395796-9395915,
           9396496-9396594,9396983-9397204,9397482-9397621,
           9397741-9397852,9398021-9398071,9398151-9398240,
           9398397-9398567,9398663-9398815,9399774-9399950,
           9400045-9400182,9400295-9400365,9400739-9400838,
           9401324-9401380,9401469-9401525,9401619-9401699,
           9401782-9401864,9401975-9402110
          Length = 1632

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 248 THLNFLYKLV-NYTNHVKFVKTRYNKMNLLLSYY 346
           TH  F  K+  N+++H +  KT++++ +  +S+Y
Sbjct: 624 THETFATKMFRNFSSHHRLEKTKFSETDFTISHY 657


>01_06_1179 - 35161229-35162368
          Length = 379

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 302 RTSHDLYNLQVCIKSLNGCRYH 237
           RT+ DL +L  C  SLN   YH
Sbjct: 339 RTAADLEDLLACYLSLNAAEYH 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,011,386
Number of Sequences: 37544
Number of extensions: 176055
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)