Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C22
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = -1

Query: 236 SPAPAATSNHHNSTRV*QPSPYRCSRFPSPATAAPQPDHPARSGPVSPEWQT 81
           SPA A+  +  ++  V   +     +  SP+     P H   S   SP  +T
Sbjct: 33  SPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAART 84


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = -1

Query: 185 QPSPYRCSRFPSPATAAPQPDHPARSGPVSPE-WQTPRPDRDAWNRGSPLRP 33
           Q  P    +   P++ AP P       P +P+    P P +     G P  P
Sbjct: 4   QKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 152 SPATAAPQPDHPARSGPVS 96
           +P   AP P  P+ SGP S
Sbjct: 337 TPPKPAPPPPPPSSSGPDS 355


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 45  TPAVPSIAVGPGSLP 89
           TP  PS   GPG +P
Sbjct: 392 TPCTPSPPRGPGGVP 406


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 45  TPAVPSIAVGPGSLPFGGNW--ARSSW 119
           +PA+ SI+V  GS+     W   R+ W
Sbjct: 555 SPAIESISVDSGSINTVAEWEPPRALW 581


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 171 IWRGLLYTGGVMVVT 215
           IW+G+ +TG V+  T
Sbjct: 224 IWKGVKWTGKVVYFT 238


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 171 IWRGLLYTGGVMVVT 215
           IW+G+ +TG V+  T
Sbjct: 277 IWKGVKWTGKVVYFT 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,229
Number of Sequences: 438
Number of extensions: 2560
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)