Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C21
(276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 2.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 24 3.5
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 24 3.5
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 24 3.5
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 24 4.6
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 24 4.6
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 23 8.0
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 23 8.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 8.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 23 8.0
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.0
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 2.0
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 94 MSQSSEKPASGQDVVDPTGPSARKGVL-ISFRTGKTMEIPEKDIL 225
+ ++S P+ D +DP P KG+ +S + K+ E ++D++
Sbjct: 733 VDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLI 777
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 70 KPHFHPKRMSQSSEKPASGQDVVDPTGPSARKG 168
+P+++P + + +PA Q V SAR+G
Sbjct: 112 QPYYYPNQPNYYPAQPAYAQPVYAQPATSARRG 144
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 24.2 bits (50), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 272 PIRFSFSNS-PTNLHLPKISFSGISIVFPVL 183
P++F F T++H P+ SGI I P+L
Sbjct: 67 PLQFMFPGLIDTHIHAPQYPNSGIGIDVPLL 97
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 227 PKISFSGISIVFPVLNDIRTPFLALGPVGSTTS 129
P +SF + ++ + + + +PF LG V S+ S
Sbjct: 301 PDVSFKNLHVLSCMEDSVMSPFRELGSVTSSMS 333
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 23.8 bits (49), Expect = 4.6
Identities = 15/70 (21%), Positives = 28/70 (40%)
Frame = +1
Query: 1 ARGKHFVTWDIIFLSSTTVIIYDKPHFHPKRMSQSSEKPASGQDVVDPTGPSARKGVLIS 180
A K+++T + + L + + K PK+ E + + +PT P+ G
Sbjct: 163 AESKNYITSEDLHLGFDSTYVQKKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQ 222
Query: 181 FRTGKTMEIP 210
TG + P
Sbjct: 223 ASTGNAPKNP 232
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 23.8 bits (49), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 162 KGRSNIV*NWKNYGNTRKRYL 224
KG+ N NWK Y T K YL
Sbjct: 153 KGQQN---NWKRYNPTTKSYL 170
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 218 SFSGISIVFPVLNDIRTPFL 159
S +GI I FPV ND + +L
Sbjct: 93 SVNGIMIYFPVFNDGQDQYL 112
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 95 CHKVLKNQLLAKMWWILQVQVLERAF 172
C KV+K + K W Q + LERA+
Sbjct: 363 CKKVVKVIEVWKTWIAFQEETLERAW 388
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 171 SNIV*NWKNYGNTRKR 218
SNI+ NWKN T KR
Sbjct: 1084 SNIIRNWKNEIVTEKR 1099
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 73 PHFHPKRMSQSSEKPASGQDVVDPTGPSARKGVLISFRT 189
P FH QS +PAS + D GP+ +++ R+
Sbjct: 393 PSFH-----QSHNQPASNNEASDTNGPALVPVLIVCMRS 426
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 260 SFSNSPTNLHLPKISFSGISIVFPVL-NDIRTPF 162
S S PTN+ +P+IS + ++++ NDI T F
Sbjct: 77 SISVPPTNISVPQISSNPLNLMKKSSDNDIFTTF 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,683
Number of Sequences: 5004
Number of extensions: 26034
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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