Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C21
(276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 28 1.2
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 1.6
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 27 2.8
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 27 2.8
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 26 3.7
05_04_0364 + 20658219-20658416,20658475-20658543 26 3.7
06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 26 5.0
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 26 5.0
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216 25 6.5
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 25 6.5
10_08_1067 + 22671113-22671589 25 8.7
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 25 8.7
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.9 bits (59), Expect = 1.2
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 28 DIIFLSSTTVIIYDKPHFHPKRMSQSSEKPASGQDVVD-PTGPSARKGVLISFRTGKTME 204
DI L + + DKP+ + + G D P G +A+K V GKT+E
Sbjct: 869 DIDDLDTKKTSVRDKPYISKADRRKLKKGQNVGDSTSDSPNGEAAKKPVNSQQEKGKTIE 928
Query: 205 IPEKDILGRCRFVGEFEKLNRIGE 276
P + R G+ KL +I E
Sbjct: 929 KPANPKVSR----GQKGKLKKIKE 948
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 LYTINLIFIQKGCHKVLKNQLLAKMWWILQVQVLERAF*YRLE-LEKLWKYQKKISWEGA 235
+YT + + GC LK +L M + +V++ +RA R+E L + Y K EG
Sbjct: 777 VYTTKTLVLSAGCFPELKTLVLKHMPDVNKVEIEDRAL-PRIEGLHIVSLYNVKKVPEGI 835
Query: 236 DSLENLK 256
+ L +LK
Sbjct: 836 EFLRSLK 842
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 168 ALSSTWTCRIHHILARSW 115
A+ STWTC + H R+W
Sbjct: 317 AVLSTWTCSLMHRRGRAW 334
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 217 DILGRCRFVGEFEKLNRIGE 276
++L CR V EFE+LN+I E
Sbjct: 354 NMLQGCRSVDEFERLNKINE 373
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 FLSSTTVIIYDKPHFHPKRMSQSSEKPASGQDVVDPTGPSARKGVLISFRTGKT-MEIP 210
+ S++T ++ P S S PA G + P G R+G ++ R T +IP
Sbjct: 143 YSSASTPLLIRLPGGQADSTSAPSLGPAVGNEPTTPKGQGPRRGFVLMSRAASTGTQIP 201
>05_04_0364 + 20658219-20658416,20658475-20658543
Length = 88
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 82 HPKRMSQSSEKPASGQDVVDPTGPSARKGVLISFRTGKTMEIPEKDI 222
HP R++QS+ +P + + T R G +S+RTG+ + I K +
Sbjct: 23 HPTRIAQSA-RPTQLPETL--TLQPGRSGRPVSYRTGRNLYIDNKTL 66
>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
Length = 293
Score = 25.8 bits (54), Expect = 5.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = -1
Query: 87 WMKMRFIVYNYCS 49
W++ +F++YNYC+
Sbjct: 265 WVQRKFMIYNYCT 277
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 167 PFLALGPVGSTTSWPEAGFSELCDILFG*K*GLSYIITVVLDKNIISQ 24
PF ALG VGS S P F+ + L G GL+ ++ K++I +
Sbjct: 292 PFNALGKVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVIGE 339
>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
Length = 750
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 124 QKLVFQNFVTSFLDENEVYRI 62
+KLVF +TS +DE +R+
Sbjct: 325 RKLVFDGLITSDIDEERTFRV 345
>02_04_0515 +
23582105-23583519,23583613-23583741,23583835-23583970,
23584051-23584139,23584236-23584347,23584427-23584533,
23584630-23584723
Length = 693
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 217 DILGRCRFVGEFEKLNRIGE 276
++L CR V EFE+LN I E
Sbjct: 338 NMLQGCRSVDEFERLNTINE 357
>10_08_1067 + 22671113-22671589
Length = 158
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 172 LISFRTGKTMEIPEKDILGRCRFVGEFEKLN 264
LIS TG+T E EKDI R R++G E ++
Sbjct: 79 LISGFTGRTPEQVEKDI-DRDRYMGPLEAVD 108
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 178 SFRTGKTMEIPEKDILGRCRFVGE 249
+F G + ++ +K++LG R +GE
Sbjct: 667 TFELGSSSDVADKELLGTLRLLGE 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,021,420
Number of Sequences: 37544
Number of extensions: 153560
Number of successful extensions: 364
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -