Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C21
(276 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 1.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 1.1
Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical pr... 27 1.9
Z49207-4|CAA89073.1| 195|Caenorhabditis elegans Hypothetical pr... 27 2.5
U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical pr... 26 4.4
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 26 4.4
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 25 7.7
U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related... 25 7.7
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 25 7.7
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 25 7.7
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 25 7.7
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 34 IFLSSTTVIIYDKPHFHPKRMSQSSEKPASGQDVVDPT 147
++ S+ PH+ P S S PA+GQ V P+
Sbjct: 1574 VYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPS 1611
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 34 IFLSSTTVIIYDKPHFHPKRMSQSSEKPASGQDVVDPT 147
++ S+ PH+ P S S PA+GQ V P+
Sbjct: 1581 VYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPS 1618
>Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical
protein F59B2.2 protein.
Length = 460
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 272 PIRFSFSNSPTNLHLPKISFSGISIVFPVLNDIRTPFLALGPVG--STT 132
P +F+ + T + + +F G +++ P+ N + P L P G STT
Sbjct: 228 PAATNFTGTITMIGMSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTT 276
>Z49207-4|CAA89073.1| 195|Caenorhabditis elegans Hypothetical
protein R07E3.7 protein.
Length = 195
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 263 FSFSNSPTNLHLPKISFSGISIVFPVLNDIRTP 165
F F NSP H + F+ I + P+ + TP
Sbjct: 102 FDFENSPLPRHKEYLDFNDIENMVPMKKQVTTP 134
>U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical
protein C16D9.4 protein.
Length = 409
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 31 IIFLSSTTVIIYDKPHFHPKRMSQSSEKPASGQDVVDPTGPS 156
+I + V Y+ HP+ + +S+EKP V++ + S
Sbjct: 59 LILSHYSEVTDYENIEVHPRNLVKSNEKPQRSSKVINTSSES 100
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 13 HFVTWDIIFLSSTTVIIYDKPHFHPKRMSQSSEKP 117
HF + ++ + + PHFHP S+ S+KP
Sbjct: 1612 HFSMTSLPLIAHSPTSFWSSPHFHP---SEDSKKP 1643
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 109 EKPASGQDVVDPTGPSARKGVLISFRTGK 195
++P S QD DP GP A K +S + G+
Sbjct: 1503 QEPLSPQDSGDPVGPPAIKKGKLSRQPGR 1531
>U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related
family protein 6 protein.
Length = 982
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 209 GISIVFPVLNDIRTPFLALGPVGSTTSWP 123
GIS+ FP +N TP +G ++P
Sbjct: 201 GISVTFPQVNQEGTPIYIAFVIGGVDTYP 229
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 109 EKPASGQDVVDPTGPSARKGVLISFRTGK 195
++P S QD DP GP A K +S + G+
Sbjct: 1503 QEPLSPQDSGDPVGPPAIKKGKLSRQPGR 1531
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 185 ELEKLWKYQKKISWEGADSLENLK 256
E +++WK+Q K S G D E+ K
Sbjct: 41 EFQEIWKFQTKSSIRGVDLDEHKK 64
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 185 ELEKLWKYQKKISWEGADSLENLK 256
E +++WK+Q K S G D E+ K
Sbjct: 41 EFQEIWKFQTKSSIRGVDLDEHKK 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,153,424
Number of Sequences: 27780
Number of extensions: 140575
Number of successful extensions: 430
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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