Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C20
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   1.0  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    24   3.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   4.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.5  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   5.5  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    23   7.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   9.6  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    23   9.6  

>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 105 TYYTGKGTLKLDERSTHISTRLWQLETFRYILSFQT 212
           TYYTGKG       S  I  RL+Q+ T  +++ F T
Sbjct: 192 TYYTGKGL------SCIIVHRLFQILTVSFVIGFTT 221


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 55  TQFYVNEPQFLNLQYRLV 2
           T F +N P +LN  Y+L+
Sbjct: 139 TTFLINAPHYLNYMYKLL 156


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 159 STRLWQLETFRYILSFQTCWSGNIGRACW 245
           S  +W     R +LS Q  +  +IG  CW
Sbjct: 302 SLSIWSSALPRPLLSCQNVFQKSIGDVCW 330


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 204  FQTCWSGNI 230
            FQ CWSGN+
Sbjct: 1323 FQFCWSGNV 1331


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 26  KLWFIYIKLCNYLVSN 73
           K WF++ +LC Y + N
Sbjct: 131 KRWFLFPRLCIYTIRN 146


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 22  LKTVVHLHKIV*LFSK*QNITYTFVIYLLIILV 120
           L T +HL K +   +    I+YT++ +LL I +
Sbjct: 385 LSTTIHLFKKIVRITLSTFISYTWIPFLLFIFL 417


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 108 YYTGKGTLKLDERST 152
           YYT KG L  DE+ T
Sbjct: 119 YYTAKGDLPSDEKIT 133


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 79   ITYTFVIYLLIILVKEHL 132
            +TY+ +IY L +L+ E++
Sbjct: 1040 VTYSAIIYCLRVLISENI 1057


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,091,045
Number of Sequences: 5004
Number of extensions: 18402
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)