Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C20
         (268 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0232 - 13049649-13052807                                         30   0.29 
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211...    29   0.51 
03_01_0320 - 2510907-2512190                                           29   0.67 
01_06_0002 - 25492807-25494675                                         28   0.89 
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113...    28   1.2  
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053...    27   2.7  
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    25   8.3  

>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 258 NVDSSSMLSQCYRTNMFESLEYI*MFQVAKVLYLYEY 148
           N++ +   + C R N+F SLE     Q+ KV Y++++
Sbjct: 851 NLEGTIFTAPCTRDNIFRSLETFWASQLLKVFYIWDW 887


>11_05_0058 +
           18719852-18719929,18720032-18720889,18720969-18721118,
           18722248-18722496,18722531-18722575,18722576-18722638
          Length = 480

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 84  LHVCNLSTYYTGKGT--LKLDERSTHISTRLWQLETF 188
           +HVCN S YY GK T   +L++R  H + +  ++  F
Sbjct: 361 VHVCNGSLYYPGKKTDLRRLEKREPHKNLKFAKMTGF 397


>03_01_0320 - 2510907-2512190
          Length = 427

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 117 GKGTLKLDERSTHISTRLWQLETFRYILSFQTCWSGNIGRACWK 248
           GKG L     ST  S R+W L+T R I SF    S      CW+
Sbjct: 265 GKGALY--SGSTDGSIRVWDLDTHRCIYSFAGHSSTVTALLCWE 306


>01_06_0002 - 25492807-25494675
          Length = 622

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 221 GPTCLKA*NISKCFKLPKSCTYMSTA 144
           GP  L+A +IS  + L ++CT++STA
Sbjct: 339 GPAGLRASSISPSYGLAENCTFVSTA 364


>03_03_0153 -
           14910420-14910769,14910946-14911008,14911084-14911339,
           14911432-14911522,14911798-14912096,14912177-14912295,
           14922536-14922594,14922676-14922965,14923052-14923567,
           14923634-14923936
          Length = 781

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 HISTRLWQLETFRYILSFQTCWSGNIGRA 239
           H++T  W +E+ R IL   TC   ++ RA
Sbjct: 588 HLTTYTWMVESMRSILRVLTCRVDDVARA 616


>04_03_0795 -
           19704354-19704464,19705152-19705214,19705298-19705378,
           19705468-19705623,19705711-19705785,19706477-19706587,
           19707206-19707304,19707453-19707546,19707779-19707838,
           19709262-19709334,19711448-19711490,19711533-19711606,
           19711985-19712075,19712170-19712214,19712533-19712589,
           19713440-19713544,19713817-19713932,19714625-19714634,
           19714810-19714920,19715502-19715594,19715664-19715690,
           19715736-19715798,19716326-19716451,19716812-19716949,
           19717164-19717832,19717949-19718123,19718269-19718450
          Length = 1015

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 153 HISTRLWQLETFRYILSFQTCWSGNIGR 236
           H+S+  W+L T  Y+ S      GN GR
Sbjct: 447 HLSSESWKLLTILYVSSLDYATIGNSGR 474


>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
 Frame = -3

Query: 236 SPNVTGPTCLKA*NISKCFKLPK------SCTYMSTA 144
           SP    P CL + N SK  K+P+      SCT +ST+
Sbjct: 210 SPLFAAPGCLSSSNPSKFLKVPRREGSSFSCTPVSTS 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,483,464
Number of Sequences: 37544
Number of extensions: 102547
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)