Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C20
         (268 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    29   0.60 
Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.      27   2.4  
AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinas...    27   2.4  

>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 194 ISKCFKLPKSCTYMSTAL 141
           + K FKLPKSC YM++ L
Sbjct: 933 VFKSFKLPKSCVYMTSYL 950


>Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical
           protein F52F12.3 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 96  NLSTYYTGKGTLKLDERSTHISTR 167
           NL+++Y GKGT  L E++ +  TR
Sbjct: 51  NLNSHYLGKGTYGLVEKTRYRKTR 74


>AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 96  NLSTYYTGKGTLKLDERSTHISTR 167
           NL+++Y GKGT  L E++ +  TR
Sbjct: 51  NLNSHYLGKGTYGLVEKTRYRKTR 74


>AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinase
           MOM-4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 96  NLSTYYTGKGTLKLDERSTHISTR 167
           NL+++Y GKGT  L E++ +  TR
Sbjct: 51  NLNSHYLGKGTYGLVEKTRYRKTR 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,942,080
Number of Sequences: 27780
Number of extensions: 103018
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)