Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C19
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 77 9e-15
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 77 9e-15
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 76 1e-14
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.60
03_06_0519 - 34481751-34482722 29 1.8
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 28 4.2
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 4.2
04_03_0718 + 19005460-19005767,19005854-19006370 28 4.2
09_06_0041 - 20440266-20441381 27 7.3
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 27 7.3
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 7.3
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 7.3
05_03_0373 - 13194723-13195847,13196219-13196809 27 7.3
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 7.3
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 76.6 bits (180), Expect = 9e-15
Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPAR 371
E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 57 ETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPR 116
Query: 372 TAEDRSAY-----RRAPPAGAPHDKKADVGPGSAD 461
DR + R P GAP D + G A+
Sbjct: 117 FEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAE 151
Score = 74.9 bits (176), Expect = 3e-14
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYV 196
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYV 55
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 76.6 bits (180), Expect = 9e-15
Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPAR 371
E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 57 ETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPR 116
Query: 372 TAEDRSAY-----RRAPPAGAPHDKKADVGPGSAD 461
DR + R P GAP D + G A+
Sbjct: 117 FEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAE 151
Score = 74.9 bits (176), Expect = 3e-14
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYV 196
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYV 55
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 76.2 bits (179), Expect = 1e-14
Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPAR 371
E F+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP P R
Sbjct: 57 ETFSWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPR 116
Query: 372 TAEDRSAY-----RRAPPAGAPHDKKADVGPGSAD 461
DR + R P GAP D + G A+
Sbjct: 117 FEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAE 151
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYV 196
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYV 55
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.60
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 367 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 263
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>03_06_0519 - 34481751-34482722
Length = 323
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 333 RRGAVGRPDAPARTAEDRSAYRRAPP-AGAPHDKKADVGPGSAD 461
R+G G PA ++ + RR+ AGAP D A+ GP S +
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTN 66
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 27.9 bits (59), Expect = 4.2
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +3
Query: 213 WRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR--RGA---VGRPDAPA 368
WR F+ YLT E I YL +HL + +T RS+ + R +G+ + +P PA
Sbjct: 623 WRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDESRKYKGSLEYISQPSTPA 679
Query: 369 RTAED 383
+ +D
Sbjct: 680 GSNKD 684
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 276 LPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 413
LPP + LKR V RR + PD R +Y R PPA
Sbjct: 510 LPPPVRSRPLKRPVDIRD-RRPVMSIPDRVRRLPPPERSYDRRPPA 554
>04_03_0718 + 19005460-19005767,19005854-19006370
Length = 274
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYL--RIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPART 374
E AW F YL + Y + + L P+ +P + ++ R R + A T
Sbjct: 202 EAVAWMWFGRYLAVANLVYFSTNLLVFLIPKFLPRSFEKYFRM---------RDEVYAET 252
Query: 375 AEDRSAYRRAPPAGAPHDKKAD 440
AEDR A A KKAD
Sbjct: 253 AEDRHAAAATVAAKPVESKKAD 274
>09_06_0041 - 20440266-20441381
Length = 371
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 53 HGFVLASTSWTTNFPPR 3
HGF++ ST+ N+PPR
Sbjct: 126 HGFLVTSTTAANNYPPR 142
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 279 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 413
PPE L+ + RRG +P P A + + +PPA
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPA 144
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 47 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 145
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +3
Query: 306 KRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 449
+R + T R GAV P PA D A +R PAG D A VGP
Sbjct: 74 RRKLPLATGRDGAVAGP--PADPVPD--ARQRRVPAGGGADPAAGVGP 117
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 288 IVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGA 419
++ + + E +RR + GR +R A++ RRA PAGA
Sbjct: 43 LISGAVSAAEPNERIRRSS-GRYIVASRRADEEDGLRRAVPAGA 85
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 339 GAVGRPDAPARTAEDRSAYRRAPP-AGAPHD 428
G GR R A D A RR P GAPHD
Sbjct: 105 GEAGRAGLRRRQAVDEVAARREEPQGGAPHD 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,848
Number of Sequences: 37544
Number of extensions: 243850
Number of successful extensions: 883
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -