Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C19
(462 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10 pro... 107 2e-23
BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10 p... 107 2e-23
BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10 p... 107 2e-23
BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein. 107 2e-23
BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10 p... 107 2e-23
BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein. 107 2e-23
BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein. 107 2e-23
BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein. 107 2e-23
BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10 p... 107 2e-23
AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10 v... 105 1e-22
BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein. 95 8e-20
AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10 p... 82 1e-15
AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein. 72 1e-12
Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein. 67 3e-11
U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow... 31 1.9
M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow... 31 1.9
BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal d... 31 1.9
AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal d... 31 1.9
BC089447-1|AAH89447.1| 981|Homo sapiens proline-rich transmembr... 31 2.5
BC040508-1|AAH40508.1| 597|Homo sapiens PRRT3 protein protein. 31 2.5
AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens ... 31 2.5
AK090993-1|BAC03564.1| 667|Homo sapiens protein ( Homo sapiens ... 31 2.5
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 29 7.8
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 29 7.8
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 29 7.8
M17367-1|AAA51741.1| 728|Homo sapiens APOB protein. 29 7.8
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 29 7.8
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 29 7.8
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 29 7.8
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 29 7.8
>U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10
protein.
Length = 172
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 107 bits (257), Expect = 2e-23
Identities = 60/91 (65%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLT 118
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 119 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 147
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 58
>AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10
variant protein.
Length = 174
Score = 105 bits (251), Expect = 1e-22
Identities = 59/91 (64%), Positives = 64/91 (70%), Gaps = 5/91 (5%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 368
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPA L+RS R ET R +G G RP
Sbjct: 69 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRS-RPETGRPRPKGLEGERPARLT 127
Query: 369 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA 458
R DR YRR A P GA DKKA+ G GSA
Sbjct: 128 RGEADRDTYRRSAVPPGA--DKKAEAGAGSA 156
Score = 95.5 bits (227), Expect = 8e-20
Identities = 44/59 (74%), Positives = 52/59 (88%), Gaps = 2/59 (3%)
Frame = +2
Query: 26 KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
+MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 9 QMLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 67
>BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein.
Length = 72
Score = 95.5 bits (227), Expect = 8e-20
Identities = 49/70 (70%), Positives = 57/70 (81%), Gaps = 2/70 (2%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVL* 202
MLMPK+N ++IYE LFKEGVMVAKKD H PKHP+L + PNL+V+KAMQSLKSRGYV
Sbjct: 1 MLMPKKNWIAIYELLFKEGVMVAKKDVHMPKHPELADKNAPNLRVMKAMQSLKSRGYVK- 59
Query: 203 TVRMEAFLLV 232
V +E FLLV
Sbjct: 60 EVCLETFLLV 69
>AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10
protein.
Length = 78
Score = 81.8 bits (193), Expect = 1e-15
Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 2/51 (3%)
Frame = +2
Query: 50 RVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYV 196
R++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYV
Sbjct: 1 RIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYV 51
Score = 60.1 bits (139), Expect = 4e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHL 278
EQFAWRHFYWYLTNEGI+YLR +LHL
Sbjct: 53 EQFAWRHFYWYLTNEGIQYLRDYLHL 78
>AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein.
Length = 4684
Score = 71.7 bits (168), Expect = 1e-12
Identities = 36/69 (52%), Positives = 42/69 (60%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAE 380
E FAW HFYWYLTNEGI +LR +LHLPPEIVPA+L+R R + A P A
Sbjct: 63 ETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQGP 122
Query: 381 DRSAYRRAP 407
S +R P
Sbjct: 123 LGSPPKRGP 131
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK--HPDLEKIPNLQVIKAMQSLKSRGYV 196
MLMP+ +IYE LF+EGVMVAKKD P+ HP + + NLQV++AM SL++RG V
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVPGVTNLQVMRAMASLRARGLV 61
>Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein.
Length = 4684
Score = 66.9 bits (156), Expect = 3e-11
Identities = 34/69 (49%), Positives = 41/69 (59%)
Frame = +3
Query: 201 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAE 380
E FAW HF+WYLTNEGI +LR +LHLPPEIV A+L+R R + A P A
Sbjct: 63 ETFAWCHFFWYLTNEGIAHLRQYLHLPPEIVAASLQRVRRPVAMVMPARRTPHVQAVQGP 122
Query: 381 DRSAYRRAP 407
S +R P
Sbjct: 123 LGSPPKRGP 131
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +2
Query: 29 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK--HPDLEKIPNLQVIKAMQSLKSRGYV 196
MLMP+ +IYE LF+EGVMVAKKD P+ HP + + NLQV++AM SL++RG V
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVPGVTNLQVMRAMASLRARGLV 61
>U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 169 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 38
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 169 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 38
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 169 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 38
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 169 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 38
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>BC089447-1|AAH89447.1| 981|Homo sapiens proline-rich transmembrane
protein 3 protein.
Length = 981
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 279 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 419
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 407 PPVQAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 453
>BC040508-1|AAH40508.1| 597|Homo sapiens PRRT3 protein protein.
Length = 597
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 279 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 419
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 23 PPVKAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 69
>AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens
cDNA FLJ44846 fis, clone BRACE3051144. ).
Length = 195
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 120 LGAW*SFLATMTPSLKRYS 64
LG W FLAT+TPSLKR S
Sbjct: 177 LGRWTFFLATVTPSLKRSS 195
>AK090993-1|BAC03564.1| 667|Homo sapiens protein ( Homo sapiens
cDNA FLJ33674 fis, clone BRAWH2002047. ).
Length = 667
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 279 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 419
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 407 PPVQAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 453
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1830 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1867
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>M17367-1|AAA51741.1| 728|Homo sapiens APOB protein.
Length = 728
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 163 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 200
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 552 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 589
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 342 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 229
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,351,239
Number of Sequences: 237096
Number of extensions: 1316216
Number of successful extensions: 3473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3447
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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