Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C18
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   173   8e-45
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   173   1e-44
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.76 
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   4.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   4.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.1  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   5.4  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    24   9.4  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    24   9.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   9.4  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    24   9.4  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  173 bits (422), Expect = 8e-45
 Identities = 79/126 (62%), Positives = 96/126 (76%)
 Frame = +1

Query: 37  GKDQFHIRMRLHRFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 216
           GKD FH+R+R H FHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 217 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYR 396
            D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+ 
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200

Query: 397 PEHGPL 414
            + G L
Sbjct: 201 NKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  173 bits (421), Expect = 1e-44
 Identities = 79/126 (62%), Positives = 96/126 (76%)
 Frame = +1

Query: 37  GKDQFHIRMRLHRFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 216
           GKD FH+R+R H FHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 217 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYR 396
            D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+ 
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200

Query: 397 PEHGPL 414
            + G L
Sbjct: 201 NKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 130 QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 303
           +T M    G  +   AR+ IG+ +  +      K     AL++A F  PG+ +I V +
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 170 VPWGFPNAPRIPV 132
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +2

Query: 329 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 415
           V +LRS+++ + L+++ ++SST   + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 40  KDQFHIRMRLHRFHVIRINKMLSCAGADRLQTGMR 144
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 207 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 109
           RH G+S  +++ C L +  +T    LE + S A
Sbjct: 94  RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 312 APLLRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPS 133
           +PLL  I  L  R  + S ++ LN +         +  GLS+ H+RY +   P R    +
Sbjct: 92  SPLLSPISPLKLRFHKYSVSKQLNSV-------GKQGFGLSSNHSRYASPSSPARLARGA 144

Query: 132 L-EPISSS 112
           L E +S+S
Sbjct: 145 LGEELSNS 152


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 180 TRYCALGFPERTTHPSLEPISSSARQHFIDAD 85
           T +    +P+R T PSL+ + +    H +  D
Sbjct: 226 THFAPYYYPQRATSPSLKQVPTYLGTHVLQQD 257


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 384 RQVPPRAWTPRCLE 425
           R VP +AW  RC+E
Sbjct: 171 RNVPEKAWANRCVE 184


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 291  DLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHT-RYCALGFPE 151
            DL+A R+   S  +S+N + LP V+ A +    SNT++  Y   G+ E
Sbjct: 2766 DLIAWRQ---SVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHE 2810


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 325 EREEFEKLRDAGRFANDGCNVKY 393
           +R+  ++L D  +F  D CNV+Y
Sbjct: 148 QRDHLDRLCDQVKFYLDQCNVEY 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,763
Number of Sequences: 5004
Number of extensions: 39796
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)