Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C18
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 180 6e-46
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 178 2e-45
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 174 3e-44
02_01_0759 - 5628913-5630870,5631023-5631047 31 0.57
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 0.99
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027... 29 1.7
06_01_0499 - 3581145-3582425 29 2.3
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 3.0
09_06_0088 + 20774901-20775491,20776172-20776687 28 4.0
09_06_0319 - 22293869-22293906,22294539-22295808 27 5.3
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304... 27 5.3
08_02_0567 + 18769742-18769790,18769928-18771351 27 5.3
06_02_0084 - 11547820-11548773 27 5.3
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 27 5.3
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 27 7.0
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 27 7.0
12_01_0197 + 1456296-1456668,1456930-1458746 27 9.2
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 9.2
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 27 9.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 180 bits (437), Expect = 6e-46
Identities = 84/129 (65%), Positives = 99/129 (76%)
Frame = +1
Query: 28 RHEGKDQFHIRMRLHRFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 207
++ GKD FH+R+R+H FHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 208 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNV 387
VR + EALRRAKFKFPGRQKI S+KWGFTK+ REE+ KL+ GR +DG N
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNA 197
Query: 388 KYRPEHGPL 414
+ HG L
Sbjct: 198 QLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 178 bits (433), Expect = 2e-45
Identities = 81/127 (63%), Positives = 96/127 (75%)
Frame = +1
Query: 28 RHEGKDQFHIRMRLHRFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 207
+H GKD FH+R+ H +HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 208 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNV 387
VR D A EALRRAKFKFPGRQ++ S KWGFT+++R+E+ KL+ GR DG N
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNA 504
Query: 388 KYRPEHG 408
K HG
Sbjct: 505 KLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 174 bits (423), Expect = 3e-44
Identities = 80/118 (67%), Positives = 92/118 (77%)
Frame = +1
Query: 37 GKDQFHIRMRLHRFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 216
GKD FH+R+R+H FHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 77 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRC 136
Query: 217 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVK 390
EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ +L+ GR DG N K
Sbjct: 137 KPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAK 194
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 30.7 bits (66), Expect = 0.57
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -3
Query: 221 SLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNILLMRMTWKRCSLIRMW 51
SLER DI CP+ T A V G PN + V S S +D +R + CS I+
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDG---LRAIGRSCSKIQAL 289
Query: 50 N 48
N
Sbjct: 290 N 290
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 0.99
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 200 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 108
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_04_0327 +
16700235-16700312,16701756-16701978,16702488-16702730,
16702815-16702865,16702965-16703225,16703319-16703371,
16703446-16703815,16703906-16704750
Length = 707
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 451 HYVVHFGISSRHRGVHALGGT*RCI 377
+Y+VHF + ++ +G LGGT CI
Sbjct: 260 YYIVHFFLRNKRQGWQLLGGTVLCI 284
>06_01_0499 - 3581145-3582425
Length = 426
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 355 HHVASQIPHVRTW*SPTS*IHRSSGDQG 272
H A+++ HVR W SPTS + D G
Sbjct: 116 HGAAAELAHVRAWWSPTSHAAAADWDDG 143
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 154 GKPQGTVARVRIGQPIMSVRSSD 222
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_06_0088 + 20774901-20775491,20776172-20776687
Length = 368
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 263 LARRRASMT---CAFQRSLERTDIMGCPIRTRATVPWGFPNAPRIPVWSLSAPAHDNILL 93
L R +S+T C+ ++ T+++GCP+R V G P + R + P D +
Sbjct: 207 LELRESSITPIHCSDEQLAAVTEVLGCPVRLLPIVYLGLPLSVRKLGKADLQPMMDRLAK 266
Query: 92 MRMTWK 75
+WK
Sbjct: 267 SLASWK 272
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 154 GKPQGTVARVRIGQPIMSVRSSD 222
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>09_02_0020 +
3042502-3042980,3043068-3043176,3043290-3043476,
3043690-3043784
Length = 289
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 181 VRIGQPIMSVRSSDR---WKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLR 351
+R+G P S +R W + E R K GR+ ++WG ++ ++ R
Sbjct: 111 MRVGPPKQSDAGEERRGAWSRRSSEMWERRGEKRRGRKGSMRIQRWGQKRFSKKNINLHR 170
Query: 352 DAGRF 366
+A RF
Sbjct: 171 EAYRF 175
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 139 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 291
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 103 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 231
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +1
Query: 106 SCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGR- 282
S G DR + G+P+ + VR P++ +++ W A + + + PG
Sbjct: 251 SSYGYDRSPKIVEMDTGRPKSRSSSVRTSPPVVDAGAAEEWYANSVSSPLLPFHQLPGAP 310
Query: 283 QKIYVSKKWGFTKYEREEFEKLRDA 357
+I F +Y+ EK R A
Sbjct: 311 PRISAPSARHFPEYDWCPLEKPRPA 335
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 296 YLRSGALPSTNVRNLRSYVMLDVLLTMDATSSTAQSMDPS 415
YL S ++++R LR Y +LD LL A + Q D S
Sbjct: 298 YLLSYGAAASSLRLLRKYGLLDFLLPFQAAYMSDQMKDKS 337
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 334 EFEKLRDAGRFANDGCNVKYRPEHGPLDVWRKFQNELH 447
E EK GC V + P H +D RK N++H
Sbjct: 611 ELEKCTKLVEGGCTGCPVSFAPLHKSIDQLRKAANKIH 648
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 22 RNRHEGKDQFHIRMRLHRFHVIRI 93
RNR E +D+ H+ R++ +++RI
Sbjct: 478 RNREEFQDELHVISRINHMNLVRI 501
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 283 QKIYVSKKWGFTKYEREEFEKLRD 354
+KIY S WGFT E+E + D
Sbjct: 2 EKIYRSHLWGFTANEKEAYSGEND 25
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 213 AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQH 100
A ++NG H + G+P T P E S+ R H
Sbjct: 125 AIKNNGSLYAHVYFARSGYPVDPTDPEYEQSSAFGRTH 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,762
Number of Sequences: 37544
Number of extensions: 301166
Number of successful extensions: 862
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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