Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C17
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   1.6  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   2.8  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   3.7  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    24   6.5  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    23   8.6  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   8.6  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    23   8.6  

>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 310 PKSWLLFNDDVVQDGKLT*PRSTGSKVMLPEHTYWYLATG 191
           P   + F    + + +   P S   K  LPE  +W L TG
Sbjct: 96  PNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTG 135


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 123 FYHRKLRLILELYMWVRTHVHRRVIRPHYQP--YNHRF 16
           F+HR L    +LY  +  H HR  + P+     YNH F
Sbjct: 147 FWHRYLHYNKKLYNMIHAHHHRLQV-PYAMGALYNHPF 183


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 16  EAMIVRLVVRPDYASMDVGSNPHVQL 93
           ++ + RL + PD   +    NPHV+L
Sbjct: 40  DSQVNRLCISPDKKFLAAAGNPHVRL 65


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 154 YHYAMVASRYFLPPKTQANFRVVHVGSNPRP*TRNPAALPTVQSSLHLS 8
           +H   ++ +YFLPPK +    +    S P P  +   A+ T    L L+
Sbjct: 53  HHKHSLSHQYFLPPKNRQPLEI--PASYPIPTFKETFAILTFPQKLKLT 99


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 163 WPATAPRFKNLLPSTNRCVPVA 228
           W A AP ++NL  ++N   P+A
Sbjct: 176 WRALAPIYRNLAYASNTIDPIA 197


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 238 SKVMLPEHTYWYLATGF 188
           S V+  +H YW+L++GF
Sbjct: 486 SLVVKLKHKYWHLSSGF 502


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 44  GRITRLWTWVRTHMYNSKISLSF 112
           G  TR+W WV T+  + +   SF
Sbjct: 657 GEWTRVWEWVGTNTLDFQTDRSF 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,743
Number of Sequences: 5004
Number of extensions: 30501
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)