Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C17
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    26   5.4  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.        26   5.4  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical
           protein T05E11.5 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 281 CGPGW*THLASKYWF*SNATGTHLLVLGNRFLNLGAVAGQAVL 153
           C P   +HL  ++W  +N  G    +LG   L+L +    ++L
Sbjct: 256 CSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLL 298


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 183  PGSGSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTHVHRRVIR 46
            P +G WP   + ML    D+F       I  LY  V  +  +RV+R
Sbjct: 2886 PAAGKWPTSASVMLRPQEDVFLPTANTCISRLY--VPVYSSKRVLR 2929


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 183  PGSGSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTHVHRRVIR 46
            P +G WP   + ML    D+F       I  LY  V  +  +RV+R
Sbjct: 2886 PAAGKWPTSASVMLRPQEDVFLPTANTCISRLY--VPVYSSKRVLR 2929


>Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical
           protein D2045.6 protein.
          Length = 780

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 177 SGSWPGRPTTMLWLPHDI 124
           SGSWP  PTT + LP  +
Sbjct: 547 SGSWPTFPTTPITLPQQL 564


>U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.
          Length = 780

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 177 SGSWPGRPTTMLWLPHDI 124
           SGSWP  PTT + LP  +
Sbjct: 547 SGSWPTFPTTPITLPQQL 564


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 123 FYHRKLRLILELYMWV 76
           FYHR+L+ IL LY+ V
Sbjct: 69  FYHRRLKRILPLYLLV 84


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 123 FYHRKLRLILELYMWV 76
           FYHR+L+ IL LY+ V
Sbjct: 69  FYHRRLKRILPLYLLV 84


>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
           protein T20G5.2 protein.
          Length = 468

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 310 PKSWLLFNDDVVQDGKLT*PRSTGSKVMLPEHTYWYLATG 191
           P+  + F    + + +   P++ G +  LPE  +W L TG
Sbjct: 89  PEEGIRFRGYSIPECQKLLPKAKGGEEPLPEAIWWLLCTG 128


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
            T19A5.1 protein.
          Length = 1280

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 210  IGTWQQVFEPGSGSWPGRPTTMLWL 136
            + +W++ +E      PG+P + LW+
Sbjct: 972  VDSWEESWESDLAEIPGKPLSYLWI 996


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,627
Number of Sequences: 27780
Number of extensions: 175881
Number of successful extensions: 371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)